RNA id: TU338260


Basic Information

Item Value
RNA id TU338260
length 2881
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G298154
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76093445 ~ 76096325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAGACCAATGACTATGGATTACTACATCTAATTGCAACATCGGCTTCGCTACACCAAACCTGTCCCAGAACAGGGTGATTTACGTCAAGTATTTGAGGTTTCTGAGGTTTATCGTCCTACAAACTCAAAGGTTTGGGAAACGTACATGCTATGGGTCTGAAATCACATGACTTAAAGGACTGTATACCCCAATGCTGGTCCTTTAAGACTAGAGTCCGTGAACACCGGGACATCTGATCCAATGTCTTCCAATCAAAAACTATCAGAGGCGGGATTATGTTTGGCTGGGAAATGTTCTAGTGAAAATGTCACCTAAACTTAATTTCAACGCATTCAGTAAAGTGCCATGTTCCACATCTTTCAATATTTTATAACATCAACTGTTTTTGACAACCaaaatactatatatacagtAGCTTACACAGATCAGAAAGACTGCTAGAGGGTGCAACCTTAACATCAAACATGGAGTGAAAATAAGAGGAAGAGGAAACAACCGATGAATGTACTTGGAAGGGCACATGCTTGTTTGCTCTGCTTAACCCTTGTGTTGTCCTGAGGGTGAAAAATGACccgccactatgtttaacagGAGAGAAAAACCCCTAAATgatattttttcaacttgaaatttgatGACTCTTCCcagagtgaccccaacattagaaaaagtgaaacatcgcctttgttcacatttccatgaaagctgtacaccaccagggtacaaagattgtctaATACCCTGACTACACCATTCGCGTCGCatgcgcgagcgttgcaaaataaatgtagaaatataTGTTATTCAATTACCGCACCCACACTGCTCTCGCGCGCCAaggagcgtctgcgttgccaagggctaaaatagaagtcctttctatttctgacacagatcgcgctgcaagtcctgcctctcccgtctcctcattggtttatagaatcAGGTACCCATTCAGGGAAGAGAGCACCGCCccgcacagcagcctctgcagcgcttgtgaaagctgttcagggggctgaatcttgtcctgatccacccgAGGCTGtagctggggcaggcaagaggaggagatgccaattctgcccccaaagaaggactggaaaataaatactatgtgctgcacatgtgagaaatacatctgcaaagtccatgtacacacacttgcatactgtcctacatgtgctaattagagttgaaTGATTTATGTTCTTGatgttttgttttgtatctattatcttattttattcttatttattgttgttgtttatacaccttaTGGGTCAGGGCAATGGTtcaaaaaatgggagaagacatattttgtagttgaatttcTCATTGTACAGTACATAAGAATATATCATTATGTTGGCAAAAAAATTCAAGACTGTTATTGCTTCCCTTCGATAtaatgcattcaaaactactttctcCACATTactgctactttcttaggctatacaagtgctatctcttgctaaaaaacatatgtttacacctatgcagtccctttagcaataataataataataataacccactactttagtaaagaaaacaataatgacaggtgtgttgtaataaaaacgagtggtgtccacttattaaatgcagtctttctgcattgtgaagagggaatcCCCAGAAATTCACAAAGTTTTTAATGAATGACatgttgtttcttcatgcaaaatagatttagGGTTCaaaattcaattaagctgctttattttaggggtttagtgaaggcgggtcatttttgacccttaGGACAAGAGGAGTATACAGATTGTTAAGGCTACACAAGGGTAGAATTCCCTCTGTCACCCACAGTGTGGTTCTTCAAACACAGGGACCTGCTCTGATAGTTTTACTCTGCTCAATGCCAAAACCCTCCCCAccgggcacacatacacacacatacacactaatctcacacacacacacacacacacacacacacacaccactttagCCCACTCTGACAAATCAATATACCCCAAAACCACAGGGATTAGTTTCTCTTTGTTTTCAAAGTAGGCCAGCGTCAAACTAGCGTGAAATGCAGTACACTACCAGAGGGTACAGAGAGATCTATACAGGAAATGAGCCAGAACTGTCAACATCCTCAAATAACTGGAATCCCCCTAAACACAAGTAATTCACCCTACCAAAAGGGAAAATGTCAGCCCTAATAGGCAGGTGGAATGGTTGGTGATGCGTTGTTAGACGACTGGCACCATCCCGGCAGACTGGCACTGACCTTTTGACCTTTTGCCAGCATGGTGCCAGTCTCCCATGCTGGCAGACTGGCAATCCAGAAGGTCATCAGGTCACCCATAGTATGGTTCTCCAAACACAGGGACCTGCTCTGATAGTTTTACTCTGCTCATTGCCAAAACCCTCCCCaccgggcacacacacacacacacacacacacacacacacacacaatctcataCATATGTTATTGTTTTGACCTGTCTTTCTTTGTTTTAGTTGCAGATCATTACATTGATACATTGATATGGTAGGATATGGTAGGACATGCTTGCCTGTTAGTCCTCGTATCATCATTTGGTCAATGAGCTGTTGTGTATTGGGTGTATTGGTGGTGGGCATGTTAAGAAGTGTGCAAAGACACTACCAGATATAGTATGCGTGCCCCATCGGTACGGATGGTCAACTGCCAACAGCATGTGTAAATAGCCTAAACTTACATTTCCGCCTCCTCGTTATTGGATTGTACTTTCATCACATCATGGACATAATATGGGTATCTAAGACACTCAGTGGTTGGCTGTCAGAATTGTGGACAGAAATCCAGTTCCAGGAGTGGTTAAAATAGGGCAAATTAGAGCAAGACCCACCTGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338195 lncRNA downstream 92420 75999839 ~ 76001025 (-) True G298098
TU338164 lncRNA downstream 127737 75964940 ~ 75965708 (-) True G298067
TU338155 lncRNA downstream 138604 75954528 ~ 75954841 (-) True G298059
TU338150 lncRNA downstream 147667 75945518 ~ 75945778 (-) True G298054
TU338149 lncRNA downstream 148792 75944425 ~ 75944653 (-) True G298053
TU338261 lncRNA upstream 2754 76099079 ~ 76099438 (-) True G298155
TU338314 lncRNA upstream 81216 76177541 ~ 76177748 (-) True G298197
TU338317 lncRNA upstream 83793 76180118 ~ 76180438 (-) True G298200
TU338426 lncRNA upstream 165530 76261855 ~ 76262081 (-) True G298307
TU338501 lncRNA upstream 220830 76317155 ~ 76318606 (-) True G298376
XM_036975225.1 mRNA downstream 173753 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA downstream 203008 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975222.1 mRNA downstream 464536 75582032 ~ 75628909 (-) True LOC110520593
XM_021597988.2 mRNA downstream 464538 75582032 ~ 75628907 (-) False LOC110520593
XM_036975219.1 mRNA downstream 513920 75535014 ~ 75579525 (-) True LOC110520594
XM_036975230.1 mRNA upstream 6512 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA upstream 6512 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA upstream 6512 76102837 ~ 76118153 (-) True LOC110520602
XR_005039942.1 mRNA upstream 63792 76160117 ~ 76171119 (-) True LOC118944635
XM_036975231.1 mRNA upstream 423879 76520204 ~ 76857463 (-) True LOC110520604
TU338234 other downstream 36439 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 130371 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 1853650 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2121615 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 2213074 73877719 ~ 73880371 (-) True G296166
TU338309 other upstream 69678 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 686518 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1740157 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1748342 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1748342 77844667 ~ 77850766 (-) True LOC110520626

Expression Profile