RNA id: TU338309


Basic Information

Item Value
RNA id TU338309
length 399
RNA type TUCP
GC content 0.49
exon number 1
gene id G298192
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76166003 ~ 76166401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagagctggagagatcttggcacagacctctacatatgtcgctgaacacagagctggagagatcttgacacagacctctacatatgtccctgaacacagagctggagagatcttGGCACAAACCTCTACATATTTCCCtgaacacagagctggagagatcttggcacagacctctacatatttccctgaacacagagctggagagatcttggcacagacctctacatattttcctgaacacagagctggagagatattggcacagacctctacatatgtccctgaacacagagctggagagatcttggcacagacctctacatatgtccctgaacacagagctggagagatcttggcacagacctctacatatgtccctgaacacagagctggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338261 lncRNA downstream 66565 76099079 ~ 76099438 (-) True G298155
TU338260 lncRNA downstream 69678 76093445 ~ 76096325 (-) True G298154
TU338195 lncRNA downstream 164978 75999839 ~ 76001025 (-) True G298098
TU338164 lncRNA downstream 200295 75964940 ~ 75965708 (-) True G298067
TU338155 lncRNA downstream 211162 75954528 ~ 75954841 (-) True G298059
TU338314 lncRNA upstream 11140 76177541 ~ 76177748 (-) True G298197
TU338317 lncRNA upstream 13717 76180118 ~ 76180438 (-) True G298200
TU338426 lncRNA upstream 95454 76261855 ~ 76262081 (-) True G298307
TU338501 lncRNA upstream 150754 76317155 ~ 76318606 (-) True G298376
TU338596 lncRNA upstream 219143 76385544 ~ 76385775 (-) True G298467
XM_036975230.1 mRNA downstream 47850 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 47850 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 47850 76102837 ~ 76118153 (-) True LOC110520602
XM_036975225.1 mRNA downstream 246311 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA downstream 275566 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975231.1 mRNA upstream 353803 76520204 ~ 76857463 (-) True LOC110520604
XM_021598002.2 mRNA upstream 699829 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 715089 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 912337 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 912337 77078738 ~ 77082651 (-) True LOC110520611
TU338234 other downstream 108997 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 202929 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 1926208 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2194173 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 2285632 73877719 ~ 73880371 (-) True G296166
TU339219 other upstream 616442 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1670081 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1678266 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1678266 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1762085 77928486 ~ 77983204 (-) True G300200

Expression Profile