RNA id: TU338622


Basic Information

Item Value
RNA id TU338622
length 293
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G298493
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76400612 ~ 76400904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtggtcagtgattccatgtctatgcatacagggcagcagcctctaaggtgcagggttgagtaactgagTGGTAGTCGGcgagtgacagtgactaagttcagggcagggtacttggtggaggccagctagtgatggctatttaacagtctgatggccttgagatggaagctgtttttcagtctctctgtcccaactttgatgcacctgtactgaccttgccttctggttgatgtccttgatggtctttttagccttcctgtgacatcgggtgctgtaggtgtcctggagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338596 lncRNA downstream 14837 76385544 ~ 76385775 (-) True G298467
TU338501 lncRNA downstream 82006 76317155 ~ 76318606 (-) True G298376
TU338426 lncRNA downstream 138531 76261855 ~ 76262081 (-) True G298307
TU338317 lncRNA downstream 220174 76180118 ~ 76180438 (-) True G298200
TU338314 lncRNA downstream 222864 76177541 ~ 76177748 (-) True G298197
TU338629 lncRNA upstream 4504 76405408 ~ 76405856 (-) False G298500
TU338630 lncRNA upstream 4504 76405408 ~ 76407066 (-) True G298500
TU338638 lncRNA upstream 13406 76414310 ~ 76414629 (-) True G298508
TU338644 lncRNA upstream 18599 76419503 ~ 76420000 (-) True G298514
TU338665 lncRNA upstream 33232 76434136 ~ 76436695 (-) True G298534
XR_005039942.1 mRNA downstream 229493 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 282459 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 282459 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 282459 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 510175 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975231.1 mRNA upstream 119300 76520204 ~ 76857463 (-) True LOC110520604
XM_021598002.2 mRNA upstream 465326 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 480586 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 677834 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 677834 77078738 ~ 77082651 (-) True LOC110520611
TU338309 other downstream 234211 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 343606 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 437538 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2160817 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2428782 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 381939 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1435578 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1443763 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1443763 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1527582 77928486 ~ 77983204 (-) True G300200

Expression Profile