RNA id: TU338629


Basic Information

Item Value
RNA id TU338629
length 365
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G298500
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76405408 ~ 76407066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTACAGGTTATTTGGAGGTTCTATTAACCCTGAGAACAGAAATTacaggttatttggaggttttattaaccctgagaacagaaattacagGTTATTTGGAGGTTCTATTAACCCTGAGAACAGAAATTacaggttatttggaggttttatTAACCCCGAGAACAGAAATTacaggttatttggaggttttattaaccctgagaacagaaattacaggttatttggaggttttatTAACCCCGAGAACAGAAATTacaggttatttggaggtttttgaaTAACCTCCTTAAAACTTTCACAGGATgttttcaataagacttttaataacactgctagcttattttGGGTCAACTtgttgaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338622 lncRNA downstream 4504 76400612 ~ 76400904 (-) True G298493
TU338596 lncRNA downstream 19633 76385544 ~ 76385775 (-) True G298467
TU338501 lncRNA downstream 86802 76317155 ~ 76318606 (-) True G298376
TU338426 lncRNA downstream 143327 76261855 ~ 76262081 (-) True G298307
TU338317 lncRNA downstream 224970 76180118 ~ 76180438 (-) True G298200
TU338638 lncRNA upstream 8454 76414310 ~ 76414629 (-) True G298508
TU338644 lncRNA upstream 13647 76419503 ~ 76420000 (-) True G298514
TU338665 lncRNA upstream 28280 76434136 ~ 76436695 (-) True G298534
TU338686 lncRNA upstream 43126 76448982 ~ 76449228 (-) True G298554
TU338699 lncRNA upstream 52700 76458556 ~ 76458804 (-) True G298567
XR_005039942.1 mRNA downstream 234289 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 287255 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 287255 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 287255 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 514971 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975231.1 mRNA upstream 114348 76520204 ~ 76857463 (-) True LOC110520604
XM_021598002.2 mRNA upstream 460374 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 475634 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 672882 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 672882 77078738 ~ 77082651 (-) True LOC110520611
TU338309 other downstream 239007 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 348402 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 442334 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2165613 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2433578 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 376987 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1430626 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1438811 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1438811 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1522630 77928486 ~ 77983204 (-) True G300200

Expression Profile