RNA id: TU338686


Basic Information

Item Value
RNA id TU338686
length 247
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G298554
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76448982 ~ 76449228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATctagtgcaaccaattaccttcagaagtcacataattagttaaataaagtccacctgtgtgcaatctaagtgtcacatgatctgtcccATTATCACAGTATACTGTGTAtccacctgttctgaaaggctccaATGTCTGCatcaccactaagcaaggggcaccaccaagcaagcggcactatgaagaccaaggagctctccaaacaggtcagggacaaagttgtggagaagtacagatcagggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338665 lncRNA downstream 12287 76434136 ~ 76436695 (-) True G298534
TU338644 lncRNA downstream 28982 76419503 ~ 76420000 (-) True G298514
TU338638 lncRNA downstream 34353 76414310 ~ 76414629 (-) True G298508
TU338630 lncRNA downstream 41916 76405408 ~ 76407066 (-) True G298500
TU338629 lncRNA downstream 43126 76405408 ~ 76405856 (-) False G298500
TU338699 lncRNA upstream 9328 76458556 ~ 76458804 (-) True G298567
TU338705 lncRNA upstream 15088 76464316 ~ 76464619 (-) True G298573
TU338718 lncRNA upstream 22138 76471366 ~ 76471686 (-) True G298586
TU338720 lncRNA upstream 23357 76472585 ~ 76472790 (-) True G298588
TU338733 lncRNA upstream 33562 76482790 ~ 76482989 (-) True G298601
XR_005039942.1 mRNA downstream 277863 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 330829 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 330829 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 330829 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 558545 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975231.1 mRNA upstream 70976 76520204 ~ 76857463 (-) True LOC110520604
XM_021598002.2 mRNA upstream 417002 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 432262 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 629510 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 629510 77078738 ~ 77082651 (-) True LOC110520611
TU338309 other downstream 282581 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 391976 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 485908 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2209187 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2477152 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 333615 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1387254 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1395439 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1395439 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1479258 77928486 ~ 77983204 (-) True G300200

Expression Profile