RNA id: TU339242


Basic Information

Item Value
RNA id TU339242
length 379
lncRNA type intronic
GC content 0.39
exon number 2
gene id G299047
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76577908 ~ 76579724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccaggtaggctagatgagaacaagttctcatttacaactgcgacctggccaagataaagcatagcagtgtgaacagacaacaacacagagttacacatggagtaaaaaataaacaagtcaataacacagtagaaaacgaAAAAAAGAGtcttgtgtgcaaaaggcatgaggaggtaggtgaataattacaatttagcagattaacactggagtgataaatgatcagatgaacatgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaattgggtgggctatttaccgatggactatgtacagctgcagcgatcagttagctgctcagatagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338740 lncRNA downstream 87443 76489887 ~ 76490465 (-) True G298608
TU338733 lncRNA downstream 94919 76482790 ~ 76482989 (-) True G298601
TU338720 lncRNA downstream 105118 76472585 ~ 76472790 (-) True G298588
TU338718 lncRNA downstream 106222 76471366 ~ 76471686 (-) True G298586
TU338705 lncRNA downstream 113289 76464316 ~ 76464619 (-) True G298573
TU339275 lncRNA upstream 47683 76627407 ~ 76627771 (-) True G299070
TU339307 lncRNA upstream 96307 76676031 ~ 76676581 (-) True G299101
TU339319 lncRNA upstream 117840 76697564 ~ 76698478 (-) True G299113
TU339322 lncRNA upstream 120551 76700275 ~ 76700752 (-) True G299116
TU339325 lncRNA upstream 121864 76701588 ~ 76701937 (-) True G299118
XR_005039942.1 mRNA downstream 406789 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 459755 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 459755 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 459755 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 687471 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_021598002.2 mRNA upstream 286506 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 301766 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 499014 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 499014 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 504529 77084253 ~ 77102682 (-) False LOC110504825
TU338309 other downstream 411507 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 520902 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 614834 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2338113 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2606078 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 203119 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1256758 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1264943 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1264943 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1348762 77928486 ~ 77983204 (-) True G300200

Expression Profile