RNA id: TU339307


Basic Information

Item Value
RNA id TU339307
length 294
lncRNA type intronic
GC content 0.47
exon number 2
gene id G299101
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76676031 ~ 76676581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgaacatctcTCAGGGGTCTTAGCCAAAGCTGCCtgttacatttgaacatctcTCAGGGGTCTTAGCCAAAGCTGCtgttacatttgaacatctcTCAGGGGTCTTAGCCAAAGCTGCCtgttacatttgaacatctcTCACGGGTCTTAGCCAAAGCTGCCCGTTACATTTGAACATCTCTCAGGGGTCTTAGCCAAAGCTGCCtgttacatttgaacatctcTCAGGGGTCTTAGCCAAAGCTGCCtgttacatttgaacatctcTCAGGGGTCTTAGCCAAAGCTGCt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339275 lncRNA downstream 48260 76627407 ~ 76627771 (-) True G299070
TU339242 lncRNA downstream 96307 76577908 ~ 76579724 (-) False G299047
TU339243 lncRNA downstream 96307 76577908 ~ 76579724 (-) True G299047
TU339241 lncRNA downstream 96689 76577619 ~ 76579342 (-) True G299046
TU338740 lncRNA downstream 185566 76489887 ~ 76490465 (-) True G298608
TU339319 lncRNA upstream 20983 76697564 ~ 76698478 (-) True G299113
TU339322 lncRNA upstream 23694 76700275 ~ 76700752 (-) True G299116
TU339325 lncRNA upstream 25007 76701588 ~ 76701937 (-) True G299118
TU339329 lncRNA upstream 28643 76705224 ~ 76705959 (-) True G299122
TU339350 lncRNA upstream 57800 76734381 ~ 76734787 (-) True G299143
XR_005039942.1 mRNA downstream 504912 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 557878 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 557878 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 557878 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 785594 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_021598002.2 mRNA upstream 189649 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 204909 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 402157 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 402157 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 407672 77084253 ~ 77102682 (-) False LOC110504825
TU338309 other downstream 509630 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 619025 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 712957 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2436236 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2704201 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 106262 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1159901 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1168086 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1168086 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1251905 77928486 ~ 77983204 (-) True G300200

Expression Profile