RNA id: TU339350


Basic Information

Item Value
RNA id TU339350
length 290
lncRNA type intronic
GC content 0.43
exon number 2
gene id G299143
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76734381 ~ 76734787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGATGATAACATGACAAGGCTGACAGTTAACAGACTGATGATGataacatgACAAGGCTGACAGTTAACAGACTGATGATGATAACATGACAAGGCTGACAGTTAACAGACTGATGATGATGACATGACAAGGCTGACAGTTACCAGACTGAGACTGATGATGATAGCATGACCAGGCTGACAGTTAACAGACTGAGACTGATGATGATAACATGACAAGGCTGAAAGTTGTCCccgtgggacggttgagctaacgtatgatgatgtgattagcatgaggttgtaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339329 lncRNA downstream 28422 76705224 ~ 76705959 (-) True G299122
TU339325 lncRNA downstream 32444 76701588 ~ 76701937 (-) True G299118
TU339322 lncRNA downstream 33629 76700275 ~ 76700752 (-) True G299116
TU339319 lncRNA downstream 35903 76697564 ~ 76698478 (-) True G299113
TU339307 lncRNA downstream 57800 76676031 ~ 76676581 (-) True G299101
TU339372 lncRNA upstream 35258 76770045 ~ 76772009 (-) False G299165
TU339375 lncRNA upstream 35258 76770045 ~ 76772009 (-) False G299165
TU339376 lncRNA upstream 35258 76770045 ~ 76772009 (-) False G299165
TU339377 lncRNA upstream 35258 76770045 ~ 76772009 (-) True G299165
TU339445 lncRNA upstream 143607 76878394 ~ 76878649 (-) True G299229
XR_005039942.1 mRNA downstream 563262 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 616228 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 616228 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 616228 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 843944 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_021598002.2 mRNA upstream 131443 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 146703 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 343951 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 343951 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 349466 77084253 ~ 77102682 (-) False LOC110504825
TU338309 other downstream 567980 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 677375 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 771307 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2494586 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2762551 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 48056 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1101695 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1109880 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1109880 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1193699 77928486 ~ 77983204 (-) True G300200

Expression Profile