RNA id: TU339375


Basic Information

Item Value
RNA id TU339375
length 455
lncRNA type intronic
GC content 0.40
exon number 3
gene id G299165
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76770045 ~ 76772009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaggatagacagttagactggtagactatattgtcactatgaatggtggataaAGTGACAGGatagacagttagactggtagactatattgtcactatgaatggtggataaAGTGACAGGatagacagttagactggtagactatattgtcactatgaatggtaGATAAAGTGACAGGatagacagttagactggtagactatattgtcactatgaatggGTGGATAAAGTGACAGGatagacagttagactggtagactatattgatcTGTGGTATATTAAAAGTTACCGCACTGAAAAGCGTAGTGCATAAGGCAAGTACCAGAACACCTTGATATATGGGAGGAGCCTGCACGCAGATTAGGACATTTGGATAGGATGGAAGAAAGTAAAACCTGCAAAAAAAGTGAATTTAAACCTGGCACTGCCCTCCCATGTGCCCAATAAAATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339350 lncRNA downstream 35258 76734381 ~ 76734787 (-) True G299143
TU339329 lncRNA downstream 64086 76705224 ~ 76705959 (-) True G299122
TU339325 lncRNA downstream 68108 76701588 ~ 76701937 (-) True G299118
TU339322 lncRNA downstream 69293 76700275 ~ 76700752 (-) True G299116
TU339319 lncRNA downstream 71567 76697564 ~ 76698478 (-) True G299113
TU339445 lncRNA upstream 106385 76878394 ~ 76878649 (-) True G299229
TU339447 lncRNA upstream 107249 76879258 ~ 76879623 (-) True G299231
TU339456 lncRNA upstream 119046 76891055 ~ 76891449 (-) True G299238
TU339457 lncRNA upstream 122730 76894739 ~ 76895279 (-) True G299239
TU339460 lncRNA upstream 127864 76899873 ~ 76901362 (-) True G299242
XR_005039942.1 mRNA downstream 598926 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 651892 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 651892 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 651892 76102837 ~ 76118153 (-) True LOC110520602
trnaa-ugc-5 mRNA downstream 879608 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_021598002.2 mRNA upstream 94221 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 109481 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 306729 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 306729 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 312244 77084253 ~ 77102682 (-) False LOC110504825
TU338309 other downstream 603644 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 713039 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 806971 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2530250 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2798215 73970482 ~ 73971830 (-) True LOC110520576
TU339219 other upstream 10834 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1064473 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1072658 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1072658 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1156477 77928486 ~ 77983204 (-) True G300200

Expression Profile