RNA id: TCONS_00029550


Basic Information

Item Value
RNA id TCONS_00029550
length 727
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_014997
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42241530 ~ 42244358 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAAGCGGCAGCAAGCACACAAGAGCTGGGAAACGCTTAGAAATAGTAGATAGCAGACTTTTTACTTTAAATCTTCAGTTTGAACTTAGACTAACGCCAAAGCATTCAGCACCATGGAGAGCGTCCGAGCCGCGGTTTACCTGAGCGTGTTCCTGTCGCTGCTGAGCGTCTGCAGGGCGCAGATTCAGATGCAGGACAGCCGACTGAGCGAGCAGGACGAGCAGTTCATCAAGAGAGACCTGGCTGAGGCACTCGATGAACTTCTGGATGGAGAACAGGATAATCGGATATCTCTGGAGAAAAAAGCAAGCGTCATTCCCAGGTGTGACGTAGGGGAGCGCTGCGCCATGAAACACGGACCACGCATCGGACGCCTGTGTGACTGTATGCGAGGAACCGCCTGCAACACTTTCTTCCTGCGCTGCTACTGATGGAGCTGGCTGAAATCATTTGATTCTTCTCTCTCAGGCTAAACTCTTGACAGCAACGCTTGAGACTGACACCTCATTTGTTAACAGTTTATTGTGTGAATTTTCATGGGTGACCTACTACTGACTCTGTTGTATTCTTCTTGCTAAACTGCTCTGTATATGATTAAAcctgtttattttcagttaataAAATGTCTTTATAAGGCTCACCCATTCTGAAAATTGTCTAATTGAAAGGTATGTCTATGTTCTCTGTGGGTTtatcatttaaatgtgtttaataaaacCTGTAAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-863 Is expressed in brain. Human ortholog(s) of this gene implicated in obesity. Orthologous to human CARTPT (CART prepropeptide).

Ensembl:

ensembl_id ENSDART00000102697

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029545 lncRNA downstream 196256 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00030336 lncRNA downstream 510551 41723487 ~ 41730979 (-) True XLOC_014992
TCONS_00030335 lncRNA downstream 511509 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00030334 lncRNA downstream 728272 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030333 lncRNA downstream 735046 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00029556 lncRNA upstream 161063 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029797 lncRNA upstream 274219 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029561 lncRNA upstream 304295 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029567 lncRNA upstream 310063 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029570 lncRNA upstream 316484 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029548 mRNA downstream 3090 42235739 ~ 42238440 (-) False XLOC_014996
TCONS_00029549 mRNA downstream 3527 42235744 ~ 42238003 (-) True XLOC_014996
TCONS_00029544 mRNA downstream 196158 41841183 ~ 42045372 (-) False XLOC_014993
TCONS_00029543 mRNA downstream 250426 41841147 ~ 41991104 (-) False XLOC_014993
TCONS_00029541 mRNA downstream 722579 41515759 ~ 41518951 (-) False XLOC_014991
TCONS_00029551 mRNA upstream 18715 42263073 ~ 42291355 (-) False XLOC_014998
TCONS_00029552 mRNA upstream 19496 42263854 ~ 42291355 (-) True XLOC_014998
TCONS_00029553 mRNA upstream 122928 42367286 ~ 42391383 (-) False XLOC_014999
TCONS_00029554 mRNA upstream 122935 42367293 ~ 42391390 (-) True XLOC_014999
TCONS_00029555 mRNA upstream 152929 42397287 ~ 42416696 (-) False XLOC_015000
TCONS_00029546 other downstream 68302 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 869552 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1460259 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1604839 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2055267 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 350910 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 434006 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 785024 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1805289 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1814634 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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