RNA id: TU339555


Basic Information

Item Value
RNA id TU339555
length 2386
lncRNA type intronic
GC content 0.42
exon number 3
gene id G299327
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77033186 ~ 77038902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagaaacagagggacagatagagatataaacagagagacagattgagatagaaacagagggacatatagaaacagagggacagatagagatagagggacagatagagacagagagacagaaagagacagagggacagatagagatataaacagagggacagatagagatagaaacagagagacagatagagatagaaacagagacagatagagatataaacagagagacagatagaaacagagggacagatagagacagagagacagatagagatataaacagagggacagatataaacagagggacagatagagacagagggatagatatacacagagagacaggtagaaacagagggacagatagagatagaaacagagggacagatataaacagagggacagatagagatagagatagaaacagagggacagatataaacagagggacagatagagatagaAGGACAGAAACAGAGGggcagatagaaacagagacacagatagagatagagaaacagaggggcagatagaaacagagggacagattgagatagaaacagagagacagatagaaacagagagacagatagagatagaaacagagagacagatagaaacagagagacagatagaaacagagagacagatagagatagaaacagagggacagatagacagatagagatagaaacagatagacagatagaaacagagagacagatagagatagaaacagagaggcagatagaaatagagggacagatagaaacagagagacagatagaaataGAGAGGCAGATAGAAACAGAGtgacagatagaaacagagggacagattgagatagaaacagagaggcagatagaaacagagggacagatagaaacagagagataggtagaaatagagaggcagatagaaacagagggacagatagaaacagagggacaaatagagatagaaacagagagacagacagagataaaaacagatagacagatagaaacagagagacagatagagatagaaacagagagacagatagaaacagagacaggtagaaatagagggacagatagaaacagagagacaggtagaaatagagagacaggtagaaacagagagacaggtagaaatagagggacagatagaaacagagatacagatagaaaaagagagacaggtagaaacagagagacagaaacagaggggcagatagacagatagaaaacagagagacagatagagatagaaacagagagacagatagagacagagagacagatagaaacagagggacaaatagagagacagatagagatagaaacagagagacagattgagataGAGGGACAAATAGATGGAcagccagacacagagagaggtagacaaaCAGACAACAAGAGatggccacagacagacagacagacagacagacagacagacagacagattgttGTGTGCTTTGTTTGTCTGAAGTGGTTGTGTCTGCATTGGGAGACTAGTTCTAAAGCATCCTAATAAGAGAGTGGTCTTTGAGTAGGGAGTCCTGCTGCTGGAGTGCTGCTCATGTGGGGTCTTCTCAAGGATCCTCCCCGCCCCGCAGATAGGAGGGGGAGcagtgggagagaagaggagaggagagcctcaGGGGTAAGGAAAGAGAACGTAGCAGGGATCTCACAACAACAAACAAGCAACGTTTTTTCATGAATCATTTTAAGAGTTTACGTCATCTCGTGAGGGGGAGAAACAAACTGAGTAAGGCCAACTACGTCTAAAGCTAATTTTACATGAGCTAAATCTCACAGTATAGAATTGCTGGCAGCATTGTAGATGTGGGATGATATAATGATTTGGATGTGATTGATACTAATTGATATAAGTGGTTCATGTGAGGCTTGTCATTATGGAGAACTTTGTAATTATCCAATTAAATAGTGTGCGAGAACTGCCAAGCGAACACATTAGTGAGGATGACACTGATGCCCCTCCTCATCCACGGTGTCACATAATGGCTGAGGTGGAGTTGTAAATGGAAGCAACTAATCCTGATGATGTTGTGATGAAATATGCGCTAAGAAATTAAGTTGTGAACATCCTGTCCCTCTTttatgacagacatgacagagagAAATAAAGTTGAATTATGATATACTCAAAACAGCCAAGCATTTTGGTAGACATGCTAGTAATTCATGAAGCAAGCTTAGGTTGGCAAGAACCCCAGAGAGACTGTGTTGCCCCACATAACCCCAGAGAGACTGTGTTGACCCACATAACCCCAGAGAGACTGTGTTGACCCACATAACCCCAGAGAGACTGTGTTGACCCACATAACCTCAGAGAGACTGTGTTGACCCACATAACCCCAGAGAGACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339546 lncRNA downstream 11062 77021728 ~ 77022124 (-) True G299319
TU339517 lncRNA downstream 44361 76988368 ~ 76988825 (-) True G299292
TU339516 lncRNA downstream 44871 76987862 ~ 76988315 (-) True G299291
TU339514 lncRNA downstream 49101 76983315 ~ 76984085 (-) True G299289
TU339511 lncRNA downstream 57862 76975071 ~ 76975324 (-) True G299286
TU339605 lncRNA upstream 95203 77132656 ~ 77133062 (-) True G299373
TU339534 lncRNA upstream 112539 77149992 ~ 77151643 (-) True LOC110520613
TU339628 lncRNA upstream 137281 77174734 ~ 77177524 (-) False LOC110520616
TU339622 lncRNA upstream 137909 77175362 ~ 77177524 (-) False LOC110520616
TU339633 lncRNA upstream 137909 77175362 ~ 77177524 (-) True LOC110520616
LOC110520607 mRNA downstream 150677 76881490 ~ 76882509 (-) True LOC110520607
XM_021598002.2 mRNA downstream 164186 76866230 ~ 76869000 (-) True LOC110520605
XM_036975231.1 mRNA downstream 175723 76520204 ~ 76857463 (-) True LOC110520604
XR_005039942.1 mRNA downstream 862067 76160117 ~ 76171119 (-) True LOC118944635
XR_005051383.1 mRNA downstream 915033 76102837 ~ 76118153 (-) True LOC110520602
XM_021598009.2 mRNA upstream 41285 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 41285 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 46800 77084253 ~ 77102682 (-) False LOC110504825
XM_036975239.1 mRNA upstream 46800 77084253 ~ 77102686 (-) False LOC110504825
XM_036975240.1 mRNA upstream 46800 77084253 ~ 77102688 (-) True LOC110504825
TU339219 other downstream 245455 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 866785 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 976180 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1070112 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2793391 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 799029 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 807214 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 807214 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 891033 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 997032 78034485 ~ 78035018 (-) True G300251

Expression Profile