RNA id: TU339952


Basic Information

Item Value
RNA id TU339952
length 886
lncRNA type intronic
GC content 0.41
exon number 7
gene id G299676
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77442999 ~ 77446805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtactgtactgtactgtagtgtagggtagtgtactgtactgtattgtacggtagtgtactgttaggtagtgtactgtactgtactgtatggtagtgtactgttaggtagtgtactgtactgtactgttaggtagtgtactgtactgtactgtacggtagtgtactgtactgtactgtacggtagtgtactgttaggtagtgtactgtactatactgtactgttaggtagtgtagtgtactgtactgtactgttaggtagtgtactgtactgtactgttaggtactgtactgtactgtactgtactgttaggtagtgtactgtactgtactgtactgttaggtagtgtactgtcctgtactgtactgtatggtagtgtactgttaggtagtgtactgtactgtagtgtattgcagtgtaatgtagtgtattgtactgtactgtactgttaggtagtgtactgtactgtactgtagtgtagtgtagtgtagtgtactgtactgtattgtacggtagtgtactgtactgtgctgtactgtactgtactgtagtgtagggtagtgtactgtactgtattgtacggtagtgtactgttaggtagtgtactgtactgtactgtactgtagtgtactgttaggtagtgtactgtactgtactgtactgttaggtagtgtactgtactgtactgtactgttaggtagtgtactgtacggtagtgtactgttaggtagtgtactgtactgtactgttaggtagtgtactgtactgtactgttaggtagtgtactgtactgtactgtactgttaggtagtgtactgtactgtactgtactgttaggtagtgtactgtactgtactgtactgttaggtactgtactgtactgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339691 lncRNA downstream 168093 77274700 ~ 77274906 (-) True G299446
TU339690 lncRNA downstream 168357 77274301 ~ 77274642 (-) True G299445
TU339628 lncRNA downstream 265475 77174734 ~ 77177524 (-) False LOC110520616
TU339622 lncRNA downstream 265475 77175362 ~ 77177524 (-) False LOC110520616
TU339633 lncRNA downstream 265475 77175362 ~ 77177524 (-) True LOC110520616
TU339969 lncRNA upstream 22276 77469081 ~ 77474433 (-) True G299690
TU339971 lncRNA upstream 22982 77469787 ~ 77470144 (-) True G299691
TU339974 lncRNA upstream 25774 77472579 ~ 77474026 (-) True G299693
TU339977 lncRNA upstream 29818 77476623 ~ 77477405 (-) True G299695
TU340093 lncRNA upstream 136238 77583043 ~ 77583359 (-) True G299794
XM_036975241.1 mRNA downstream 197579 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA downstream 197579 77175082 ~ 77245420 (-) False LOC110520616
XM_021598013.2 mRNA downstream 269762 77164642 ~ 77173237 (-) True tlr7
XM_021598012.2 mRNA downstream 278553 77152248 ~ 77164446 (-) True LOC110520614
XR_002473013.2 mRNA downstream 291120 77149891 ~ 77151879 (-) False LOC110520613
XM_036975248.1 mRNA upstream 79665 77526470 ~ 77538361 (-) True LOC110520620
LOC118944720 mRNA upstream 120551 77567356 ~ 77569192 (-) True LOC118944720
XM_021598023.2 mRNA upstream 126354 77573159 ~ 77577004 (-) True LOC110520621
XM_036975251.1 mRNA upstream 385642 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 385642 77832447 ~ 77843970 (-) False pknox1.1
TU339219 other downstream 655268 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1276598 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1385993 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1479925 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 3203204 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 389677 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 397862 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 397862 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 481681 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 587680 78034485 ~ 78035018 (-) True G300251

Expression Profile