RNA id: TU339969


Basic Information

Item Value
RNA id TU339969
length 558
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G299690
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77469081 ~ 77474433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCAGATGCTTTTGGCTGTCTGCAGGAAGCGGGCGTGGTCTCCCTCCCTCAGGGTGTGATCTGCCTGAGTGATGAGGGATGACGATCTCTCGATGATCTGCTTGCAGGTGGCGATCTGCTGGGCTAGTTTTCTCAGACGGATAGCCTTTCCCTCGTTTATCTTGGTGGCTATGATCTGTCTTCTCTGCTGTACCACGTCCATCAGGAGGTCACACTCTTCCAGGAGCTTGTTCTCTTGTCTTGATGCATTCCCCTTGGAAACAGATCAGGACAGCGATATCTAATACTTTATGTTTGGCATTGACAGGATAAAACATAGCATTTTACagacatttgtatttttatttttaaatttaaaactttgttttatttatttaacctttatttaactaggcaagtcagttaattaagaacaaattcttatttgcaatgacgtcCTATCCTggcctaacccgggcgacgctgggtcaattgtgctccgccctatgggactcccagtcacggccggttgtTATACAGACAGGAATtgttgtagccctttcctgcagtcaaattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339952 lncRNA downstream 22276 77442999 ~ 77446805 (-) False G299676
TU339953 lncRNA downstream 22276 77444704 ~ 77446805 (-) True G299676
TU339691 lncRNA downstream 194175 77274700 ~ 77274906 (-) True G299446
TU339690 lncRNA downstream 194439 77274301 ~ 77274642 (-) True G299445
TU339628 lncRNA downstream 291557 77174734 ~ 77177524 (-) False LOC110520616
TU339977 lncRNA upstream 2190 77476623 ~ 77477405 (-) True G299695
TU340093 lncRNA upstream 108610 77583043 ~ 77583359 (-) True G299794
TU340094 lncRNA upstream 109855 77584288 ~ 77584549 (-) True G299795
TU340095 lncRNA upstream 111017 77585450 ~ 77585707 (-) True G299796
TU340108 lncRNA upstream 134143 77608576 ~ 77609089 (-) True G299809
XM_036975241.1 mRNA downstream 223661 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA downstream 223661 77175082 ~ 77245420 (-) False LOC110520616
XM_021598013.2 mRNA downstream 295844 77164642 ~ 77173237 (-) True tlr7
XM_021598012.2 mRNA downstream 304635 77152248 ~ 77164446 (-) True LOC110520614
XR_002473013.2 mRNA downstream 317202 77149891 ~ 77151879 (-) False LOC110520613
XM_036975248.1 mRNA upstream 52037 77526470 ~ 77538361 (-) True LOC110520620
LOC118944720 mRNA upstream 92923 77567356 ~ 77569192 (-) True LOC118944720
XM_021598023.2 mRNA upstream 98726 77573159 ~ 77577004 (-) True LOC110520621
XM_036975251.1 mRNA upstream 358014 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 358014 77832447 ~ 77843970 (-) False pknox1.1
TU339219 other downstream 681350 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1302680 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1412075 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1506007 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 3229286 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 362049 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 370234 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 370234 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 454053 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 560052 78034485 ~ 78035018 (-) True G300251

Expression Profile