RNA id: TU340108


Basic Information

Item Value
RNA id TU340108
length 514
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G299809
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77608576 ~ 77609089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaacccaaaacccagtagtctaatacaaaccaaaacccagtagtctaaaacaaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatataaaccaaaacccagtagtctaatgtaaaccaaaacccagtagtctaatacaacccaaaacccagtagtctaatataaaccagaacccagtagtctaatacaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaacccaaaacccagtagtctagTACCAcccaaaacccagtagtctaatacaacccaaaacccagtagtctaatataaaccaaaacccagtagtctaatacaaccaaaacccagtagtctaatacaacccaaaacccagtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340095 lncRNA downstream 22869 77585450 ~ 77585707 (-) True G299796
TU340094 lncRNA downstream 24027 77584288 ~ 77584549 (-) True G299795
TU340093 lncRNA downstream 25217 77583043 ~ 77583359 (-) True G299794
TU339977 lncRNA downstream 131171 77476623 ~ 77477405 (-) True G299695
TU339974 lncRNA downstream 134550 77472579 ~ 77474026 (-) True G299693
TU340110 lncRNA upstream 2184 77611273 ~ 77611547 (-) True G299811
TU340116 lncRNA upstream 3908 77612997 ~ 77613206 (-) True G299817
TU340119 lncRNA upstream 5215 77614304 ~ 77614514 (-) True G299820
TU340120 lncRNA upstream 5445 77614534 ~ 77614816 (-) True G299821
TU340146 lncRNA upstream 22616 77631705 ~ 77631992 (-) True G299847
XM_021598023.2 mRNA downstream 31572 77573159 ~ 77577004 (-) True LOC110520621
LOC118944720 mRNA downstream 39384 77567356 ~ 77569192 (-) True LOC118944720
XM_036975248.1 mRNA downstream 70215 77526470 ~ 77538361 (-) True LOC110520620
XM_036975241.1 mRNA downstream 363156 77175082 ~ 77245420 (-) False LOC110520616
XM_036975251.1 mRNA upstream 223358 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 223358 77832447 ~ 77843970 (-) False pknox1.1
XM_036975254.1 mRNA upstream 223358 77832447 ~ 77843970 (-) False pknox1.1
XM_036975256.1 mRNA upstream 223358 77832447 ~ 77843970 (-) False pknox1.1
XM_036975252.1 mRNA upstream 223358 77832447 ~ 77844046 (-) False pknox1.1
TU339219 other downstream 820845 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1442175 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1551570 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1645502 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 3368781 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 227393 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 235578 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 235578 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 319397 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 425396 78034485 ~ 78035018 (-) True G300251

Expression Profile