RNA id: TU340788


Basic Information

Item Value
RNA id TU340788
length 282
lncRNA type read_through
GC content 0.48
exon number 2
gene id G300402
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78101851 ~ 78124289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgactttggcgatgtcatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatccgttttgtcaccgaagccccatatactacccaccattgcgacctgtacgctctcgttggctggccctcgcttcatactcgtcgccaaacccactggctccatgtcatctacaagaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340783 lncRNA downstream 7518 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 87207 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 103141 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 135128 77966452 ~ 77966723 (-) True G300213
TU340540 lncRNA downstream 190000 77905812 ~ 77911851 (-) True G300190
TU340816 lncRNA upstream 55313 78179602 ~ 78180445 (-) True G300430
TU340822 lncRNA upstream 63133 78187422 ~ 78187992 (-) True G300434
TU340839 lncRNA upstream 131203 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 184130 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 185236 78309525 ~ 78309808 (-) True G300479
XM_021598045.2 mRNA downstream 5213 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA downstream 5213 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA downstream 5213 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA downstream 5241 78084705 ~ 78096610 (-) True ifngr2a
XM_021598044.2 mRNA downstream 25071 78072591 ~ 78076780 (-) True LOC110520634
XR_005039699.1 mRNA upstream 49911 78174200 ~ 78191666 (-) False crfb4
NM_001281378.1 mRNA upstream 56856 78181145 ~ 78191496 (-) False crfb4
XM_036963669.1 mRNA upstream 56868 78181157 ~ 78191663 (-) False crfb4
XM_036963679.1 mRNA upstream 56868 78181157 ~ 78191666 (-) True crfb4
XM_021598057.2 mRNA upstream 84184 78208473 ~ 78220726 (-) False LOC110520638
TU340609 other downstream 66833 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 118647 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 251085 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 251085 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 262636 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 169494 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 979060 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 979060 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1097809 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1325799 79450088 ~ 79450472 (-) True G301452

Expression Profile