RNA id: TU340816


Basic Information

Item Value
RNA id TU340816
length 681
lncRNA type intronic
GC content 0.43
exon number 3
gene id G300430
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78179602 ~ 78180445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctgccaagacagcagctactcttcctggggtttattatggatccccattagttcctgccaagacagcagctactcttcctggggtttattatggatccccattagttcctgccaagacagcagctactcttcctggggtttatcatggatccccattagttcctgccaagacagcagctactcttcctggggtttattatggatccccattagtttctgccaagacagcagctactcttcctgggtttattatggatccccattagttcctgtcaagacagcagctactcttcctggggtttattatgcaTCCTCATTaattcctgtcaaggcagcagctactcttcctaggatccaaacacaccaaaacacccACATTACATATAATACAACAGATAAAACAGTGAACTGTGTTTGTACTGAATGAACTAAAGATAAAACAGGACATCATATAACGTCCCTACACCACCACAtgtccacaacacaacatgttcaataccaccatacaacaatgtGTGCGTACTGTTTACATGTGTCTGTACCttctgtgtctcttcacagtccccgttgttccgtaaaggtgtatttttacctgctttttaaatctgactCTACTGTTTGCATCAGTTATCAGATGTGGAATagtgttccatgtagtcatggctcaatgtagtactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340788 lncRNA downstream 55313 78101851 ~ 78124289 (-) True G300402
TU340783 lncRNA downstream 85269 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 164958 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 180892 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 212879 77966452 ~ 77966723 (-) True G300213
TU340822 lncRNA upstream 6977 78187422 ~ 78187992 (-) True G300434
TU340839 lncRNA upstream 75047 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 127974 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 129080 78309525 ~ 78309808 (-) True G300479
TU340871 lncRNA upstream 136164 78316609 ~ 78316836 (-) True G300482
XM_036975286.1 mRNA downstream 41078 78112838 ~ 78138524 (-) True LOC110520635
XM_021598045.2 mRNA downstream 82964 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA downstream 82964 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA downstream 82964 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA downstream 82992 78084705 ~ 78096610 (-) True ifngr2a
NM_001281378.1 mRNA upstream 700 78181145 ~ 78191496 (-) False crfb4
XM_036963669.1 mRNA upstream 712 78181157 ~ 78191663 (-) False crfb4
XM_036963679.1 mRNA upstream 712 78181157 ~ 78191666 (-) True crfb4
XM_021598057.2 mRNA upstream 28028 78208473 ~ 78220726 (-) False LOC110520638
XR_002473015.2 mRNA upstream 28028 78208473 ~ 78220726 (-) False LOC110520638
TU340609 other downstream 144584 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 196398 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 328836 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 328836 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 340387 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 113338 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 922904 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 922904 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1041653 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1269643 79450088 ~ 79450472 (-) True G301452

Expression Profile