RNA id: TU340874


Basic Information

Item Value
RNA id TU340874
length 325
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G300484
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78325245 ~ 78325569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACGGTCAGTTACTGGGGTTATCCACATTCTGTTAATGGGGTTATCTACgttctgttactggggttatctacgttctgttactggggttatctacgttctgttactggggttatctACGTTCAGTTACTGGGGTTATCCACgttctgttactggggttatccacattctgttactggggttatccacgttctgttactggggttatccacgttctgttactggggttatccacggtctgttactggggttatctacattctgttactggggttatctacattctgttactggggttatccacattctgttactggggttatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340871 lncRNA downstream 8409 78316609 ~ 78316836 (-) True G300482
TU340868 lncRNA downstream 15437 78309525 ~ 78309808 (-) True G300479
TU340867 lncRNA downstream 16560 78308419 ~ 78308685 (-) True G300478
TU340839 lncRNA downstream 69427 78255492 ~ 78255818 (-) True G300451
TU340822 lncRNA downstream 137253 78187422 ~ 78187992 (-) True G300434
TU340879 lncRNA upstream 10012 78335581 ~ 78336060 (-) True G300489
TU340880 lncRNA upstream 12598 78338167 ~ 78338683 (-) True G300490
TU340884 lncRNA upstream 15529 78341098 ~ 78341897 (-) True G300492
TU340893 lncRNA upstream 26571 78352140 ~ 78352413 (-) True G300501
TU340904 lncRNA upstream 38078 78363647 ~ 78363856 (-) True G300512
XM_036975290.1 mRNA downstream 84061 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1647060 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1682316 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1982850 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1982852 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 2091380 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 31025 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 290227 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 342041 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 474479 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 777780 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 777780 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 896529 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1124519 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 1125139 79450708 ~ 79450970 (-) True G301453

Expression Profile