RNA id: TU340909


Basic Information

Item Value
RNA id TU340909
length 395
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G300516
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78368056 ~ 78368518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATACAAGGTCTCAATGGGCATTGTTATTAGCCTGTTATTCTTTCACTGCGCCCTCCTCTTTGTTTTTTGGCCCGAAGGCTTTCCCAGGTGATTAAGGCTGCCACTACATTACTCCATCAATCCTTCACTAACTGCCACTACATTACTCCATCAATCCTTCACTAACTGCCACTACATTACTCCATCAATCCTTCACTAACTACCACTACATTACTCCATCAATCCTTCACTAACTACCACTACATTACTCCATCAATCCTTCACTAACTGCCACTACATTACTCCATTAATAATTCACTAACTACCACTACATTACTCCATCAATCCTTCACTAACTACCACTACATTACTCCATTAATAATTGACTAACTACCACTACATTACTCCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340906 lncRNA downstream 556 78367203 ~ 78367500 (-) True G300514
TU340904 lncRNA downstream 4200 78363647 ~ 78363856 (-) True G300512
TU340893 lncRNA downstream 15643 78352140 ~ 78352413 (-) True G300501
TU340884 lncRNA downstream 26159 78341098 ~ 78341897 (-) True G300492
TU340880 lncRNA downstream 29373 78338167 ~ 78338683 (-) True G300490
TU340914 lncRNA upstream 2563 78371081 ~ 78371397 (-) True G300517
TU340921 lncRNA upstream 10852 78379370 ~ 78379571 (-) True G300524
TU340922 lncRNA upstream 12895 78381413 ~ 78381643 (-) True G300525
TU340927 lncRNA upstream 21590 78390108 ~ 78390361 (-) True G300530
TU340954 lncRNA upstream 26700 78395218 ~ 78437677 (-) True G300551
XM_036975290.1 mRNA downstream 126872 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1604111 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1639367 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1939901 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1939903 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 2048431 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 73836 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 333038 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 384852 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 517290 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 734831 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 734831 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 853580 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1081570 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 1082190 79450708 ~ 79450970 (-) True G301453

Expression Profile