RNA id: TU340969


Basic Information

Item Value
RNA id TU340969
length 386
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G300565
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78430984 ~ 78431889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGAAACAGAACGAGAGTGATAGAAACAGAACGAGAGTGATAGAAACAGCAAGAGAGTGATAGAAACAGAACGAGAGTGATAGAAACAGCAAGAGAGTGATAGAAACAGCAAGAGAGTGATAGAAACAGAAagagagtgaTAGAAACAGAACGAGAGTGATAGAAAGAGGAATAGAGTGATAGAAACAGCAAGAGagtgatagaaagaggaagagagtgatagaaacagcaagagagtgatagaaagaggaagagagtgatagaaacagagtggtagaaagaggaagagagtggtagaaagaggaagagagtgatagaaagaggaagagcgTAGGAATGAGTGTGCGACAGATAATGAGAATGAGAAACAGATCAAATTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340927 lncRNA downstream 40623 78390108 ~ 78390361 (-) True G300530
TU340922 lncRNA downstream 49341 78381413 ~ 78381643 (-) True G300525
TU340921 lncRNA downstream 51413 78379370 ~ 78379571 (-) True G300524
TU340914 lncRNA downstream 59587 78371081 ~ 78371397 (-) True G300517
TU340910 lncRNA downstream 62466 78368056 ~ 78368518 (-) True G300516
TU340984 lncRNA upstream 23830 78455719 ~ 78456080 (-) True G300580
TU341086 lncRNA upstream 44055 78475944 ~ 78476240 (-) True G300660
TU341098 lncRNA upstream 51608 78483497 ~ 78485149 (-) True G300667
TU341102 lncRNA upstream 59345 78491234 ~ 78492676 (-) True G300669
TU341107 lncRNA upstream 66957 78498846 ~ 78501763 (-) True G300674
XM_036975290.1 mRNA downstream 189800 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1540740 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1575996 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1876530 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1876532 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 1985060 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 136764 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 395966 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 447780 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 580218 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 671460 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 671460 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 790209 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1018199 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 1018819 79450708 ~ 79450970 (-) True G301453

Expression Profile