RNA id: TU340984


Basic Information

Item Value
RNA id TU340984
length 362
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G300580
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78455719 ~ 78456080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatattctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaacaatctcaattgggttgaggtcgggggattgtggaggccaggccatctgatgcagcactccgtcactctccttcttggtacaatagcccttacacagcctgaaggtgtgttgggtcattgtcctgttgagaaacaaatgatagtcccactaagcccaaaccagatgggatggcatatcgctgcagaatgctgtgttggccatgctggttaagtgtgccttgaattctaaattaatcacagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340954 lncRNA downstream 18042 78395218 ~ 78437677 (-) True G300551
TU340969 lncRNA downstream 23830 78430984 ~ 78431889 (-) True G300565
TU340927 lncRNA downstream 65358 78390108 ~ 78390361 (-) True G300530
TU340922 lncRNA downstream 74076 78381413 ~ 78381643 (-) True G300525
TU340921 lncRNA downstream 76148 78379370 ~ 78379571 (-) True G300524
TU341086 lncRNA upstream 19864 78475944 ~ 78476240 (-) True G300660
TU341098 lncRNA upstream 27417 78483497 ~ 78485149 (-) True G300667
TU341102 lncRNA upstream 35154 78491234 ~ 78492676 (-) True G300669
TU341107 lncRNA upstream 42766 78498846 ~ 78501763 (-) True G300674
TU341120 lncRNA upstream 69546 78525626 ~ 78527658 (-) True G300677
XM_036975290.1 mRNA downstream 214535 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1516549 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1551805 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1852339 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1852341 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 1960869 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 161499 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 420701 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 472515 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 604953 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 647269 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 647269 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 766018 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 994008 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 994628 79450708 ~ 79450970 (-) True G301453

Expression Profile