RNA id: TU341477


Basic Information

Item Value
RNA id TU341477
length 310
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G301006
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78899184 ~ 78899493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcttttgcacaccagtatcactacttacacaccatcatctgctcatctatcactccagtgttaatttgctaaattgtaattacttcgctactatggcctatttattgccttacctactcacgccatttgcacacactgtacatagactttttctattgtgttattgactgtacgcttgtttattccatgtgtaactctgtgttgttgtttgtgttgcactgctttgctttatcttggccaggaggcaagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgttctcaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341452 lncRNA downstream 24970 78873977 ~ 78874214 (-) True G300981
TU341443 lncRNA downstream 33831 78865117 ~ 78865353 (-) True G300972
TU341438 lncRNA downstream 40893 78857899 ~ 78858291 (-) True G300967
TU341431 lncRNA downstream 46726 78852192 ~ 78852458 (-) True G300960
TU341398 lncRNA downstream 72902 78826034 ~ 78826282 (-) True G300931
TU341486 lncRNA upstream 8699 78908192 ~ 78908578 (-) True G301015
TU341530 lncRNA upstream 49610 78949103 ~ 78949448 (-) True G301052
TU341534 lncRNA upstream 52203 78951696 ~ 78951950 (-) True G301056
TU341535 lncRNA upstream 52472 78951965 ~ 78952340 (-) True G301057
TU341536 lncRNA upstream 52927 78952420 ~ 78954284 (-) True G301058
XM_036975290.1 mRNA downstream 658000 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 1073136 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1108392 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1408926 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1408928 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 1517456 80416949 ~ 80421159 (-) False LOC110520645
TU340859 other downstream 604964 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 864166 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 915980 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 1048418 77844667 ~ 77850766 (-) False LOC110520626
TU341782 other upstream 203856 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 203856 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 322605 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 550595 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 551215 79450708 ~ 79450970 (-) True G301453

Expression Profile