RNA id: TCONS_00029568


Basic Information

Item Value
RNA id TCONS_00029568
length 1559
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_015007
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42559143 ~ 42566559 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGTGAAGGAAGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAAATGTCAATCCAGCTGGTAACAGGACAGTTCCTGATTTTGGAAAGATGTATTATGTCAAAGGTGTAATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGGGGAACAGAAGTCGCATCGACTACTATAATGGTACAACGCGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTACCAAATCAAACCAGTCCTTCCTCCCAGCGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACGGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGTTTGAGAAGATGGAGGATTGCAAAGGTGCTCAGTGTGAGGTCTGGAAAACCATCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCAGCTCACAAACTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGCAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGAATGTTTGGTCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGGAGGAACACCAAGAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACGAACAGAAAAGGTCTGTCATTCACCGTGGGTATCAATAAACGAGCGGACTGGTCAAGAGCAGAAACAAGAAAGTCTAAAATTCCATTGGTTATCTAAGCTGTGACTGAAAACCTAGGTAAATAAATATCACTCTTAAGTGATATATGTATTATTAAGCTATTATgataaaaaataacacatttatttctACTAACTTATGAAACGTCAAGGTGttgttgtgtatatatacaaaAGATAAAGGGCATTTGGGTAAAATCACCAAAGAATAACAACAATGTCTGTTGCAAATCATGCTTTAAACTGGCTGTGCTATATTTAGAATGTCCACATTAATAATAACTAGAGCTGCATATAATACTGGAAAACTGTGCAATACTGTTTTTGAGTATTGCCATAATCATATTTCTTATTTAACATTTCGATAGAAAACATGCTATTTTTGTGAGCTATTAGCTATGAttataaatgatttgtttaatGACATTAAACTAAACATGTAATAGAAATAATTCAGATCTAATTATTCTAGTTTAGACTAAAAAACTGAgtcagggttagggttagtgcagCGGATATCCTGACTTtgactattgttgttgtttttattttttaattgattttgtcTCTGACTTACTcttgttgttttagttttgtgAAGCACATTGGTCAACTTGAGTTGTCTTTAATTGTGCTATATGAATAAACTGTCATTCATTAATTGTC

Function

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-344 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDART00000147818

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029567 lncRNA downstream 4034 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029561 lncRNA downstream 7844 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029797 lncRNA downstream 34234 42518577 ~ 42524909 (-) True XLOC_015004
TCONS_00029556 lncRNA downstream 145662 42405421 ~ 42413481 (-) True XLOC_015000
TCONS_00029545 lncRNA downstream 513869 42006531 ~ 42045274 (-) True XLOC_014993
TCONS_00029577 lncRNA upstream 25673 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00030337 lncRNA upstream 119379 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029581 lncRNA upstream 276582 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030338 lncRNA upstream 276582 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029583 lncRNA upstream 354642 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00029562 mRNA downstream 1587 42553029 ~ 42557556 (-) False XLOC_015006
TCONS_00029563 mRNA downstream 1657 42553145 ~ 42557486 (-) False XLOC_015006
TCONS_00029566 mRNA downstream 1668 42554346 ~ 42557475 (-) False XLOC_015006
TCONS_00029565 mRNA downstream 1727 42553175 ~ 42557416 (-) False XLOC_015006
TCONS_00029564 mRNA downstream 3057 42553175 ~ 42556086 (-) False XLOC_015006
TCONS_00029571 mRNA upstream 1012 42567539 ~ 42573297 (-) False XLOC_015008
TCONS_00029572 mRNA upstream 1014 42567541 ~ 42573219 (-) False XLOC_015008
TCONS_00029573 mRNA upstream 1630 42568157 ~ 42571829 (-) False XLOC_015008
TCONS_00029574 mRNA upstream 2983 42569510 ~ 42573220 (-) True XLOC_015008
TCONS_00029575 mRNA upstream 7197 42573724 ~ 42588510 (-) True XLOC_015009
TCONS_00029546 other downstream 385915 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1187165 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 1777872 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 1922452 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 2372880 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029578 other upstream 28741 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 111837 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 462855 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1483120 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1492465 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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