RNA id: TU341779


Basic Information

Item Value
RNA id TU341779
length 784
RNA type TUCP
GC content 0.45
exon number 2
gene id G301282
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 79222098 ~ 79223310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCTGTCACATGCttcgaatacaacaagtgtagaccttaccgtgaaatgcttatttacaagtacttaaccaacagtgcagttcaagaggaATAACATATTTACCAAAcagactaaaataaaaagcaataataaaagtaacacaattagaataacaataacgaggctttatacagggagcaacggtacagagtcaatgtggaggctatatacagggtgtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggatatatacagggagcaacggtacagagtcaatgtggaggctatatacagggagcaacggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggagtaccggtacagagtcaatgtggaggctatatacagggagcaccggtacagagtcaatgtggaggctatatacagggagcaacggtacagagtcaatgtggaggctatatacagggtattacggtacagagtcaatgtggaggctatatacagggggtaacggtacagagtcaatgtggaggctatatacagggggtaacggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaacggtacagagtcaatgtggaggctatatacagggggtaacggtacagagtcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341788 lncRNA downstream 111829 79103179 ~ 79110269 (-) True G301285
TU341785 lncRNA downstream 121213 79100659 ~ 79100885 (-) True G301284
TU341640 lncRNA downstream 140838 79081047 ~ 79081260 (-) True G301157
TU341625 lncRNA downstream 162792 79059016 ~ 79059306 (-) True G301142
TU341608 lncRNA downstream 201368 79015741 ~ 79020730 (-) True G301125
TU341908 lncRNA upstream 157111 79380421 ~ 79380717 (-) True G301397
TU341915 lncRNA upstream 163581 79386891 ~ 79387231 (-) True G301404
TU341928 lncRNA upstream 174560 79397870 ~ 79398809 (-) False G301414
TU341929 lncRNA upstream 174560 79397870 ~ 79398809 (-) True G301414
TU341932 lncRNA upstream 176111 79399421 ~ 79400249 (-) True G301416
XM_036975290.1 mRNA downstream 980914 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 749319 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 784575 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 1085109 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 1085111 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 1193639 80416949 ~ 80421159 (-) False LOC110520645
TU341782 other downstream 114326 79103349 ~ 79107772 (-) False G301283
TU340859 other downstream 927878 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 1187080 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 1238894 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 1371332 77844667 ~ 77850766 (-) False LOC110520626
TU341970 other upstream 226778 79450088 ~ 79450472 (-) True G301452
TU341971 other upstream 227398 79450708 ~ 79450970 (-) True G301453
TU342471 other upstream 720741 79944051 ~ 79944434 (-) True G301928
TU342692 other upstream 826311 80049621 ~ 80051285 (-) True G302117
TU343001 other upstream 1196040 80419350 ~ 80421145 (-) True LOC110520645

Expression Profile