RNA id: TU341970


Basic Information

Item Value
RNA id TU341970
length 385
RNA type TUCP
GC content 0.61
exon number 1
gene id G301452
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 79450088 ~ 79450472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctgcctgcccctggacccagctacctgcctcctcctgtgtatgaccttctgcctgcccctggacccagctacctgcctcctcctgtgtatgacattCTGCCTGCCTCTGGACCCAGCTActtgcctcctcctgtgtatgaccttctgcctgcccctggacccagctacctgcctcctcctgtgtatgaccttctgcctgcccctggacccagctacctgcctcctcctgtgtatgactttctgcctgcccctggacccagctacctgcctcctcctgtgtatgaccttctgcctgcccctgaacccagctacctgcctcctcctgtgtatgaccttctgcctgcccctggacccagctacctgcctcctcctgtggtccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341968 lncRNA downstream 532 79449356 ~ 79449556 (-) True G301450
TU341932 lncRNA downstream 49839 79399421 ~ 79400249 (-) True G301416
TU341928 lncRNA downstream 51279 79397870 ~ 79398809 (-) False G301414
TU341929 lncRNA downstream 51279 79397870 ~ 79398809 (-) True G301414
TU341915 lncRNA downstream 62857 79386891 ~ 79387231 (-) True G301404
TU341993 lncRNA upstream 21465 79471937 ~ 79472149 (-) True G301474
TU342129 lncRNA upstream 137460 79587932 ~ 79588152 (-) True G301597
TU342160 lncRNA upstream 166221 79616693 ~ 79616990 (-) True G301628
TU342175 lncRNA upstream 179510 79629982 ~ 79633744 (-) True G301643
TU342200 lncRNA upstream 206519 79656991 ~ 79657418 (-) True G301668
XM_036975290.1 mRNA downstream 1208904 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 522157 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 557413 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 857947 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 857949 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 966477 80416949 ~ 80421159 (-) False LOC110520645
TU341784 other downstream 159150 79103349 ~ 79290938 (-) True G301283
TU341779 other downstream 226778 79222098 ~ 79223310 (-) True G301282
TU341782 other downstream 342316 79103349 ~ 79107772 (-) False G301283
TU340859 other downstream 1155868 78293783 ~ 78294220 (-) True G300470
TU340609 other downstream 1415070 78034485 ~ 78035018 (-) True G300251
TU341971 other upstream 236 79450708 ~ 79450970 (-) True G301453
TU342471 other upstream 493579 79944051 ~ 79944434 (-) True G301928
TU342692 other upstream 599149 80049621 ~ 80051285 (-) True G302117
TU343001 other upstream 968878 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 1057463 80507935 ~ 80508297 (-) True G302399

Expression Profile