RNA id: TU342200


Basic Information

Item Value
RNA id TU342200
length 428
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G301668
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 79656991 ~ 79657418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaaggcccttctcccccgattgctcagtttggccgggcgaccagctctaggaagagtcttggtgcttccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgctgcagaaatgtttggtacccttccacagatcgttgccttgacacaatcctgtatcgGAGCTCTACATACAATTCcctcaacctcatggcttggtttttgctctgacatgcactgtcaactgtaagaccttatatagacaggactgtgcctttctaaatcatgtctaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatgaaaacagaatgcacctgagctcaattttgagtctcatagcaaagggtctgaatacttatgtacataagGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342175 lncRNA downstream 23247 79629982 ~ 79633744 (-) True G301643
TU342160 lncRNA downstream 40001 79616693 ~ 79616990 (-) True G301628
TU342129 lncRNA downstream 68839 79587932 ~ 79588152 (-) True G301597
TU341993 lncRNA downstream 184842 79471937 ~ 79472149 (-) True G301474
TU341968 lncRNA downstream 207435 79449356 ~ 79449556 (-) True G301450
TU342203 lncRNA upstream 925 79658343 ~ 79658810 (-) True G301671
TU342206 lncRNA upstream 1540 79658958 ~ 79665421 (-) True G301672
TU342227 lncRNA upstream 33722 79691140 ~ 79691396 (-) True G301693
TU342228 lncRNA upstream 37652 79695070 ~ 79695854 (-) True G301694
TU342236 lncRNA upstream 43864 79701282 ~ 79701902 (-) True G301701
XM_036975290.1 mRNA downstream 1415807 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 315211 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 350467 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 651001 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 651003 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 759531 80416949 ~ 80421159 (-) False LOC110520645
TU341971 other downstream 206021 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 206519 79450088 ~ 79450472 (-) True G301452
TU341784 other downstream 366053 79103349 ~ 79290938 (-) True G301283
TU341779 other downstream 433681 79222098 ~ 79223310 (-) True G301282
TU341782 other downstream 549219 79103349 ~ 79107772 (-) False G301283
TU342471 other upstream 286633 79944051 ~ 79944434 (-) True G301928
TU342692 other upstream 392203 80049621 ~ 80051285 (-) True G302117
TU343001 other upstream 761932 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 850517 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 1023568 80680986 ~ 80683186 (-) True G302660

Expression Profile