RNA id: TU342471


Basic Information

Item Value
RNA id TU342471
length 384
RNA type TUCP
GC content 0.51
exon number 1
gene id G301928
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 79944051 ~ 79944434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtttagctttgcccaacctaggtcgtggcacagacactgtctcaatggggatagctgagcttactacactgactgtgctagtggcagactccactaagctggcaggctggctaacagcctgctgcctggcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgttggtagataagatgagagcacccctccagctaggatggagtcagtcattcctcagcaggccaggcttggtcctgtttgtgggtgagtcccagaaagagggccaattatctacaaattctatcttttgggaggggcagaaaacagttttcaaccagcgattgagttgtgagactctgctgtagagctcatcactccccctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342422 lncRNA downstream 46714 79897002 ~ 79897337 (-) True G301883
TU342412 lncRNA downstream 55705 79883490 ~ 79888346 (-) True G301873
TU342403 lncRNA downstream 64348 79879419 ~ 79879703 (-) True G301864
TU342386 lncRNA downstream 88029 79855793 ~ 79856022 (-) True G301847
TU342360 lncRNA downstream 117298 79826546 ~ 79826753 (-) True G301822
TU342487 lncRNA upstream 15695 79960129 ~ 79960398 (-) True G301942
TU342658 lncRNA upstream 21640 79966074 ~ 79966599 (-) True G302088
TU342659 lncRNA upstream 24484 79968918 ~ 79969447 (-) True G302089
TU342656 lncRNA upstream 27452 79971886 ~ 79972929 (-) False LOC110505446
TU342657 lncRNA upstream 29355 79973789 ~ 79984039 (-) True LOC110505446
XM_036975290.1 mRNA downstream 1702867 78235039 ~ 78241184 (-) False LOC110520639
XM_036975312.1 mRNA upstream 28195 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 63451 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 363985 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 363987 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 472515 80416949 ~ 80421159 (-) False LOC110520645
TU341971 other downstream 493081 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 493579 79450088 ~ 79450472 (-) True G301452
TU341784 other downstream 653113 79103349 ~ 79290938 (-) True G301283
TU341779 other downstream 720741 79222098 ~ 79223310 (-) True G301282
TU341782 other downstream 836279 79103349 ~ 79107772 (-) False G301283
TU342692 other upstream 105187 80049621 ~ 80051285 (-) True G302117
TU343001 other upstream 474916 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 563501 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 736552 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 776283 80720717 ~ 80721681 (-) True G302724

Expression Profile