RNA id: TCONS_00029581


Basic Information

Item Value
RNA id TCONS_00029581
length 796
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_015015
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42843109 ~ 42845206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gataaccattgacttgcatagtatttgtttttcctactatggaagttattGGCTACCGGTTTCTAGCATtcttctaaaatatcttcataaacgcttggaaccacttgagggtgagtaaatgttaattgtttttatgtgAACCATCTCTTTATTTATTGACCCTCGTGTTATTACAATCCCCAACTTCAGAACGCAGGATATTTCAGATGAAACCCAAGAGCTCTCTAAGCCTCACGACAGCCCCCCAAGATGTGTAAAGTACAGAAAGGAACCAAAAATATCCTCAAAATTGTgaccttcagtggttcaactgtaatgaTATAAAGCTACAAGAATACTTCTGTgtgcataaaaacaataaaataataacttcatTCAACGGTTTCTTCTTATTAACGTACAAATCGATACATTTCTCACTTATATTTAAGCACATtctttaaaggatagttcacccaaaagtgaataCAGAGAGGGTaatctcactatttactcaccctaaatGTTTGGAAGCCACGTCTATCAGCTGATCTGTCTTTGAGCCAATACGCTGACAGATCAGCTGATAAACGTGGCTTTCAAATGCTCTAGTGTCtatgtatatgttttacactCGGTGAAAAGTGGTGAATTGTCCCTTTAAACCACTGATTGTTTTTTGTGTTCACATTCtcaacagatatgactgtgattggctctgAAGGTCATCATTTCACCACTTTTCATCAAGCGCAAACATATACATGGATACTAGAGCGTTTGAAAGCCACGTTTATCAGCTAATCCAtcagcatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030337 lncRNA downstream 154917 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00029577 lncRNA downstream 245292 42592200 ~ 42597817 (-) True XLOC_015010
TCONS_00029570 lncRNA downstream 276564 42560842 ~ 42566545 (-) True XLOC_015007
TCONS_00029567 lncRNA downstream 288000 42554421 ~ 42555109 (-) True XLOC_015006
TCONS_00029561 lncRNA downstream 291810 42548653 ~ 42551299 (-) True XLOC_015005
TCONS_00029583 lncRNA upstream 76997 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00029585 lncRNA upstream 117923 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00030340 lncRNA upstream 406352 43250524 ~ 43251750 (-) False XLOC_015022
TCONS_00030339 lncRNA upstream 406352 43250524 ~ 43251750 (-) True XLOC_015022
TCONS_00030341 lncRNA upstream 428069 43272241 ~ 43282798 (-) True XLOC_015023
TCONS_00029579 mRNA downstream 191494 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029576 mRNA downstream 235658 42591150 ~ 42607451 (-) False XLOC_015010
TCONS_00029575 mRNA downstream 254599 42573724 ~ 42588510 (-) True XLOC_015009
TCONS_00029574 mRNA downstream 269889 42569510 ~ 42573220 (-) True XLOC_015008
TCONS_00029573 mRNA downstream 271280 42568157 ~ 42571829 (-) False XLOC_015008
TCONS_00029582 mRNA upstream 75107 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029584 mRNA upstream 94582 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029586 mRNA upstream 152796 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029588 mRNA upstream 369355 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029590 mRNA upstream 672877 43517049 ~ 43542568 (-) True XLOC_015024
TCONS_00029580 other downstream 164629 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 247725 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 669881 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1471131 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 2061838 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029587 other upstream 185210 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 1205475 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 1214820 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 3110907 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 3175705 46019877 ~ 46022879 (-) False XLOC_015042

Expression Profile

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