RNA id: TU343416


Basic Information

Item Value
RNA id TU343416
length 1281
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G302663
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80636230 ~ 80637754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatatacagcagagagactatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatatacagtagtgaggctatatacagtagcgaggctatatacagtagagaggctatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatagacagtagagaggctatatacagtagagaggcaatatacagtagagaggctaaatacagtagagatgctatatacagtacagaggctatatacagtagagatgctatatacagtagaggctatatacagtagagagggtatatacagtagagaggctatatacagtagagatgctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctgtatacagtagagaggttatatacagtagagaggctatatacagtagagaggctatatacagtagggaggctatatacagtagagaggcaatatacagtagagaggttatatacagtagaggctatatacagtagggaggctatatacagtagagaggcaatatacagtagagagactatatacagtagagaggctttatacagtagagaggctatatacaatcgagtggctatatacagtagaggctatatacagtagagagggtatatacagtagagaggctatatacagtagagatgctatatacagtagagaggttatatacagtagagaggctgtatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggctatatacagtagagaggttatatacagtagaggctatatacagtagagaggctatacacagtagagaggctatatacagaagagaggctatatacagtagagaggatatatacagtagagaggctatatacagtagtgaggctatatacagtagcgaggctatatacagtagagagactatatacagtagagaggctatatacagtagtgaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343453 lncRNA downstream 1757 80634228 ~ 80634473 (-) True G302694
TU343449 lncRNA downstream 5843 80630177 ~ 80630387 (-) True G302690
TU343423 lncRNA downstream 73690 80562331 ~ 80562540 (-) True G302670
TU343071 lncRNA downstream 110721 80525029 ~ 80525509 (-) True olig1
TU343055 lncRNA downstream 127673 80508338 ~ 80508557 (-) True G302400
TU343411 lncRNA upstream 40844 80678598 ~ 80680866 (-) True G302658
TU343412 lncRNA upstream 46975 80684729 ~ 80688496 (-) True G302659
TU343465 lncRNA upstream 51372 80689126 ~ 80689338 (-) True G302706
TU343427 lncRNA upstream 154503 80792257 ~ 80794262 (-) False G302673
TU343428 lncRNA upstream 154503 80792257 ~ 80794498 (-) False G302673
XM_021598070.2 mRNA downstream 82963 80551048 ~ 80553267 (-) True LOC110520649
XM_021598069.2 mRNA downstream 110701 80524093 ~ 80525529 (-) False olig1
XM_021598068.2 mRNA downstream 203248 80428791 ~ 80432982 (-) True LOC110520647
XM_036975321.1 mRNA downstream 215009 80416949 ~ 80421221 (-) False LOC110520645
XR_005051394.1 mRNA downstream 215013 80416949 ~ 80421217 (-) False LOC110520645
XM_036975307.1 mRNA upstream 8243 80645997 ~ 80658655 (-) False hpxa
XM_036975308.1 mRNA upstream 8243 80645997 ~ 80658660 (-) True hpxa
XM_036975300.1 mRNA upstream 159241 80796995 ~ 80873810 (-) False LOC110518808
XM_036975299.1 mRNA upstream 159241 80796995 ~ 80874124 (-) False LOC110518808
XR_005051391.1 mRNA upstream 159241 80796995 ~ 80874124 (-) False LOC110518808
TU343054 other downstream 127933 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 215085 80419350 ~ 80421145 (-) True LOC110520645
TU342692 other downstream 584945 80049621 ~ 80051285 (-) True G302117
TU342471 other downstream 691796 79944051 ~ 79944434 (-) True G301928
TU341971 other downstream 1185260 79450708 ~ 79450970 (-) True G301453
TU343413 other upstream 43232 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 82963 80720717 ~ 80721681 (-) True G302724
TU343486 other upstream 83984 80721738 ~ 80722623 (-) True G302725
TU344665 other upstream 1383634 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 1385075 82022829 ~ 82023451 (-) True G303665

Expression Profile