RNA id: TU343412


Basic Information

Item Value
RNA id TU343412
length 3768
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G302659
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80684729 ~ 80688496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacGATGCCCCCGGACAGGTCCACAtgggcaggatataaccccacccactttgccaaagcacagtccccacaccactagagggatatcttcaaccaccaacctattaccctgagacaaggccgagtatagcccatgaagatctcccccacggcacgaaccccgacaggaagatcacgtcagtgactcaacccactcaagtgacgcacccctcctagggacggcatggaagagcaccagtaagccagtgactcagccccccgtaatagggtcagaggcagagaatcccagtggagaaagaggagaaccggccaggcagagacagcaaggacggttcgtcgctccagtgcctttcacCCCCATATGCCTTGAAATATGCAGATCGACGGATTACAAGTAAACGTACATTGTAAAACTTCTGACTTTATAGCACTTTCAGAAGGCATAAATTATTAACTCATTGTCAACGtgactctgccgttgtgctgtagaatttgtgaattttgtgTCTTGTATAATACACCGAGTTTGACGGTGAGTTTATACTTGGATAAAGTGTACATTTTTTGTTAACTGTAATTCAGTTGGTTAtgttccaacattccctccatcttgtgccgatatcagttattttttaaatcttggttccaatagtttgtATATTTTTCTTAGAGGTTGTCAGTTGGATAGGCTCTGTGAAAGGTTTTCTATATCTTACCTGTCATATGAGTGTATTTTTCTGACCCAGATACGATTCCCTCAATATTTCTCTGCTGTCCAAAAGCTTTCAGGTTGAGTTTTCGTGATATACAACTTTTAGGTTGCAGGAagttttcataccccttgatttattgcacattttgttgttacagcctaaatttctAAATGGATTATATgtgttttctcacccatctacacataataacCCATTGTGACAAAGtgtaaacatgattttagaaatgtttgcaaatgttttgaaaatgaaatacagaattatctaatttacataagtttgTAGAAGCAGCTCTGACAGCTGTGgggctttctgggtaagtctcttaagagctttgcacacctggattgtacaatatttgcacattaataTTTTCAAAAATGTTTCAGGCTCTGTCACGTTGGTTGttcatcattgctagacagccttTTTCAAGTCTTTCCATAGATGCTCAAGCAGATTGAAGTCGAAACTGTAACTAGGTCACTCAGGAAAATTCTATGTTGTCTTGGAAAGctactccagtgtttatttggccttgtgttttaggttattgttctgctgaaaggtgcatttgtctcccagtgtctgtgggaaagcagactgaaccaggttttcccctAGGAttatgcctgtgcttagctctattccatttcatTTTATCCCCAAACAAatgtccttgccgatgacaagcatacccataacatgatgcagcgacGACCATGCTTGAAAACATGAAGAGcgggtactcagtgatgtgttggatttgccccaaacacaaggctttgtattcaggacaaggTTAAATTCTTTTCAGTTGTTTTAGTGTATTGTTgccaacaggatgcatgttttggaatattttaacttcttttcactctgtcaattaggttagtattgtggagtaactacaatgttgttgattcaacTTCaatgttctcctatcacagccatctGTAACTGttctaaagtcaccattggcctcatggtgaaaatccctgagcggtttcctttctctccggaAATTGAGTTAGGaaagatgcctgtatctttgtagtgactgggtgtattgatacaccatccaaagtgtaattaataacttcatcatgctctaaagggatattcaatgtctgctttttaaatgttgactcatctaccaataggagcccttctttgtgaggctttgggaaaacctcccttgtctttgtggttgaatctgtgtttgaaattcacagctcgactgagagaccttacatgtaattgtgtgtggtacagaggtgaggtagtcattcaaaaatcatgtcaaagGGATATTCTCTGTCAGCTTTATTTATGTTTtagccatctaccaataggtgcccttggttgcaaggcattggaaaacctccctgatctttctGGTTGACTCTGTGTTTATAAATACACTGCTCGACTtagggactttacagataattgtatgttaaacactattattgcacacagagtgagtccatgcaagttATTATGGGACATGCACATTtgactcctgaacatatttaggcttgtcataacaaaggggttgaatacttagagacatttcatcttttcatttatttattttttaccaatTTGAAAAATTTGaaaaaacaaaattccactttgacattatgtgatATAGTGTATAGGCCAATGACACAGAATCTCAATGTCACCCATTTTAAATTCTGGCTGTAACAACAACCCActgtggaaaaggtcaaagggGGTTGTGAAtaacttctgaaggcactgtgtttgAAAACATCTACATTCTTCAgtctaaaaaaaattatattttaaaaattctgtcatggaaataataGTATTTCCTATTACAAGGTCATTAACGGTTTCTCTGCCTTTAATTTTCCATGTAGGCCTATTCTAATTCTAGAAAAGCCATCCAAGGATAGTTAGATAGGGTTGTGTTTTTAGGGAGTGATATTGGTTATTGTAGAAAACATTTAGTTTTTCTTCCATTTTTTTGTTCTAAACCATGAAGTTGTTGATTTTCTTCGCTTTTTTTCCCTTTTGAAAACGAACACGTGAAAAGATTCTGTGAAATAAAATACTTCTGGGGATTGAGAATGCGAGTGTAACAAGAGGTTCTGAAAAAATCGCGACTGACGTTATGAAAGTTGCTCTGGTTTGAACCTAAGCTCCGGGTCGTGTAAATATGAAGGCGATAAGGACCATGTACTGCATATCGTACAGTTGGGCCCATGCAAGAGCAGAGTTGAAGGCATCAACTTAGAGGTGGAAAAGGGTAACTATttgctattttgaagaatctcaaatctaaaatatattgagattagtttaacacttttttttttggttactacatgatgtgttACTTTGtcatttttgatgtcttcactattattctacaatgtaaaaataaagaaaaaacattgaatgagaaggtgttgtAAAACGtgtgactggtagtgtatataatacCGTTCAGGTAATCAGCGTGTCTCTTATGAATTTGAAATCCTGCTCTTAATCTGATTGAAGGAATTTTCCTCAAATTTGACGATTGATAATTCTCTCCGTCTTCTCGGCGGAGGAACTGTTCTGCTTGTTGACGAGTTCATCATAAACGCATCGTGCCGACAACATCAAAACAGCCTTTCCAGACTCTGAAGTCAGGAGGACTTTGAGTTTGGTTTTCAGGAACGATCAAGCACTTCGAAAAAATaataaaagggttagggttagggttagggttagccctTTCACGAGGACAGACTTCGTAAATATTGAACTTCTGACAAAATTATGCAAGATTTTAGCTTTGGGTTTATGCTGCACTTGTTTCCTTTTTAATGATGATATGACTTTATCCCTTAACACTGCATTTCTCAATTGCTCAGAAAACagatctctcaattcaattcaattcaaggggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaagtagataatatacagaagtgaaataaacaatacaaattaacagtaaacattaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343411 lncRNA downstream 3863 80678598 ~ 80680866 (-) True G302658
TU343416 lncRNA downstream 46975 80636230 ~ 80637754 (-) True G302663
TU343453 lncRNA downstream 50256 80634228 ~ 80634473 (-) True G302694
TU343449 lncRNA downstream 54342 80630177 ~ 80630387 (-) True G302690
TU343423 lncRNA downstream 122189 80562331 ~ 80562540 (-) True G302670
TU343465 lncRNA upstream 630 80689126 ~ 80689338 (-) True G302706
TU343427 lncRNA upstream 103761 80792257 ~ 80794262 (-) False G302673
TU343428 lncRNA upstream 103761 80792257 ~ 80794498 (-) False G302673
TU343429 lncRNA upstream 103761 80792257 ~ 80794262 (-) True G302673
TU343531 lncRNA upstream 117672 80806168 ~ 80806890 (-) True G302761
XM_036975308.1 mRNA downstream 26069 80645997 ~ 80658660 (-) True hpxa
XM_036975307.1 mRNA downstream 26074 80645997 ~ 80658655 (-) False hpxa
XM_021598070.2 mRNA downstream 131462 80551048 ~ 80553267 (-) True LOC110520649
XM_021598069.2 mRNA downstream 159200 80524093 ~ 80525529 (-) False olig1
XM_021598068.2 mRNA downstream 251747 80428791 ~ 80432982 (-) True LOC110520647
XM_036975300.1 mRNA upstream 108499 80796995 ~ 80873810 (-) False LOC110518808
XM_036975299.1 mRNA upstream 108499 80796995 ~ 80874124 (-) False LOC110518808
XR_005051391.1 mRNA upstream 108499 80796995 ~ 80874124 (-) False LOC110518808
XM_036975301.1 mRNA upstream 114534 80803030 ~ 80874124 (-) True LOC110518808
XM_036975310.1 mRNA upstream 216544 80905040 ~ 80908349 (-) True LOC110520653
TU343413 other downstream 1543 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 176432 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 263584 80419350 ~ 80421145 (-) True LOC110520645
TU342692 other downstream 633444 80049621 ~ 80051285 (-) True G302117
TU342471 other downstream 740295 79944051 ~ 79944434 (-) True G301928
TU343484 other upstream 32221 80720717 ~ 80721681 (-) True G302724
TU343486 other upstream 33242 80721738 ~ 80722623 (-) True G302725
TU344665 other upstream 1332892 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 1334333 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1609260 82297756 ~ 82314081 (-) True pard3bb

Expression Profile