RNA id: TU343429


Basic Information

Item Value
RNA id TU343429
length 1986
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G302673
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80792257 ~ 80794498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtacgtgaaaGTCCATCTCTAACCCAGCCTCTATTGTCATTGGCTTTACACATACTTTCCATACTCATCCCTGGTCGATGAGTGAAACGACAATGTTTTTGCCGTTGTGTTAGGAAATCTATATCGGAACTGAAATGGACATGCCAATTGAATAACATATATATTCTTCAAGTCACCCCTCACAGCGTTCAACCACGTCCAGTGTCTCTAGGAAGACCTACACGGGTCAGATATTTGCCCCTGAGATGTCTGGGATATCCCAGGCTCCCCTTTaatttgaccttttttttttattttctttctttctttctttcttctcattGTGCAACTTCACTTCTGactgttaatttaaaaaataaaaatgttatacaCATGTTCTTGATTTGTCACAAAAGGCAGTTGTAGAGCAGGTCCCATTTTACAACACTTCTCCCAATTAACGTTGTAATGATTCATTTAATCAGTCCATTCATCTTtgtctgattgattgattgtttttatgcAGAACATCAATCAGTTTTTACATGAAGACTCACTTGTAtgaaggaaggggggggggaaAAAAAGCTGTTATTTTTTAAAAGTTGTAACAGTTGGACTATTGTGTTGAAACAACCAATCCAATCCACAAGCCATGCAAATCTACCATAAGCAATCATACGTTATGAAACGCAAAGTAGGTATACGGATACATATACAAACACTAAACTATCTTCagttgatttgattgattgactgattggtgGATGGACTGACTGATTGgtggattgactgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgaggggtCCAGTCAATGGCTGGATCTGGCGGGGTTACCATGGTAAACTTTTACAAATGAAAACGCTAAGACATTCAAGCAACCGTTTCAAATTGTATTGATTGTTTGATGTTTTGTGAGTGTGTTCAACTCTTCACGTGTGcgcgcgtgtgagagagagagagagagaggggcagaagtCGTCTTCCTCAGCAGTCGTCTTCCTCAGCACCTCTTTCCCCCCTTTACAGCCATCTCTCTGGAACTGACAGCCAAATAATTGTTTTGCCACTCCGTATGTCTCTCCCAGCGTCCAGCTTTTAATAAGATCTCCAATATTATTGTCATGAGTTCCTGGTATGTTAACTGTTCGTCGTGTTTACACCATGTGGCAGCTGTTCCATCTCTGTGACATCATGAACTGATCATGTAATCAATAATCATATGATGTTTAAGGAGTTCTGGTTGTCGTGTTTTCATTTTGATGTAAAGGGATATTGCGAGATTTTGGGGGGGGCAATTGGGCCCTTTATCAACCTTTATCAACATACCCAGAGTCAGAAGCATGTAAATACCATTTTAATGAAATGACTTCTTAACTTCCTTCGTGCTGAATGCAGAGACATGAAAATGTTATCCGTTATCTCATCTGACTCTGAGGAAGTAGAGAAAATGAATTGACAAAAATCTCGCTTTAtcactttttacatttttacgTTATGTCATCTCTTCTTTCCTACTTTTGTTTCTGCGTTGTGAAACGAAGGATAGACTTGCCCAGAGATGTTATTATGTCTCCTGGAATCTATGCAAACAGGCTTCGATTGAAACGGGAGGTGGACTGAGTCTTGTCTCtaaatcatgtagaaaccaaccAAATGGGTCTTTATAAATACGGACGCCTATGAATTAATCAACTGGATTGAATGAATTACACGCAAAATGAAGAATGTTGTAATAAATATTTTTATAATTAaaagtttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343465 lncRNA downstream 102919 80689126 ~ 80689338 (-) True G302706
TU343412 lncRNA downstream 103761 80684729 ~ 80688496 (-) True G302659
TU343411 lncRNA downstream 111391 80678598 ~ 80680866 (-) True G302658
TU343416 lncRNA downstream 154503 80636230 ~ 80637754 (-) True G302663
TU343453 lncRNA downstream 157784 80634228 ~ 80634473 (-) True G302694
TU343531 lncRNA upstream 11906 80806168 ~ 80806890 (-) True G302761
TU343538 lncRNA upstream 23510 80817772 ~ 80818703 (-) True G302765
TU343547 lncRNA upstream 40132 80834394 ~ 80835906 (-) True G302771
TU343557 lncRNA upstream 55894 80850156 ~ 80850752 (-) False G302777
TU343555 lncRNA upstream 56019 80850281 ~ 80850752 (-) True G302777
XM_036975308.1 mRNA downstream 133597 80645997 ~ 80658660 (-) True hpxa
XM_036975307.1 mRNA downstream 133602 80645997 ~ 80658655 (-) False hpxa
XM_021598070.2 mRNA downstream 238990 80551048 ~ 80553267 (-) True LOC110520649
XM_021598069.2 mRNA downstream 266728 80524093 ~ 80525529 (-) False olig1
XM_021598068.2 mRNA downstream 359275 80428791 ~ 80432982 (-) True LOC110520647
XM_036975300.1 mRNA upstream 2733 80796995 ~ 80873810 (-) False LOC110518808
XM_036975299.1 mRNA upstream 2733 80796995 ~ 80874124 (-) False LOC110518808
XR_005051391.1 mRNA upstream 2733 80796995 ~ 80874124 (-) False LOC110518808
XM_036975301.1 mRNA upstream 8768 80803030 ~ 80874124 (-) True LOC110518808
XM_036975310.1 mRNA upstream 110778 80905040 ~ 80908349 (-) True LOC110520653
TU343486 other downstream 69634 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 70576 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 109071 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 283960 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 371112 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 1227126 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 1228567 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1503494 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1950982 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 2037108 82831370 ~ 82851751 (-) False G304204

Expression Profile