RNA id: TCONS_00030340


Basic Information

Item Value
RNA id TCONS_00030340
length 1016
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_015022
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43250524 ~ 43251750 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAAAACACAGTCAAATACAGTCTCAGCCAATGATAGAATgctctcagccaatcacagaATACTACCAGTCAATCATGAAGTTCTCTCAGCCAATCACAAACACTCCCAGCCAATTACAAAACAGTCTCAGCCAATCGCAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCCCAGCCAATTACAAACCCTCCCAGCCAATGACAAACACTCCAAGCCAATGACAAACCCTTCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAAAACTCCAAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGCCAAACTCTCCCAGCCAATCAAATAACAGTTCAAGTCAATCACAAAAAAACTGCCAGCCAATCATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029585 lncRNA downstream 266837 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00029583 lncRNA downstream 325779 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00030338 lncRNA downstream 405318 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029581 lncRNA downstream 406352 42843109 ~ 42844172 (-) False XLOC_015015
TCONS_00030337 lncRNA downstream 562332 42685906 ~ 42688192 (-) True XLOC_015014
TCONS_00030341 lncRNA upstream 20491 43272241 ~ 43282798 (-) True XLOC_015023
TCONS_00029589 lncRNA upstream 178055 43429805 ~ 43524057 (-) False XLOC_015024
TCONS_00029798 lncRNA upstream 256120 43507870 ~ 43524057 (-) False XLOC_015024
TCONS_00030342 lncRNA upstream 256364 43508114 ~ 43542056 (-) False XLOC_015024
TCONS_00030343 lncRNA upstream 453165 43704915 ~ 43711293 (-) True XLOC_015028
TCONS_00029588 mRNA downstream 24400 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029586 mRNA downstream 246168 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029584 mRNA downstream 304559 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029582 mRNA downstream 321545 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029579 mRNA downstream 598909 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029590 mRNA upstream 265299 43517049 ~ 43542568 (-) True XLOC_015024
TCONS_00029591 mRNA upstream 295715 43547465 ~ 43552252 (-) True XLOC_015025
TCONS_00029592 mRNA upstream 360429 43612179 ~ 43639331 (-) False XLOC_015026
TCONS_00029593 mRNA upstream 362535 43614285 ~ 43639331 (-) True XLOC_015026
TCONS_00029594 mRNA upstream 402488 43654238 ~ 43657468 (-) False XLOC_015027
TCONS_00029587 other downstream 219636 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029580 other downstream 572044 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 655140 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 1077296 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1878546 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029605 other upstream 797897 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 807242 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 2703329 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 2768127 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029642 other upstream 4148439 47400189 ~ 47400307 (-) True XLOC_015054