RNA id: TU343792


Basic Information

Item Value
RNA id TU343792
length 519
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G302981
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81231145 ~ 81231663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTCACCCCGtgaggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccaggtactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacaagtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgttgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgcttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgagtggggccatgtatcgtgagattttgagtgaaaacctccttccataagcaagggcattgaagatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343714 lncRNA downstream 75528 81155413 ~ 81155617 (-) True G302911
TU343713 lncRNA downstream 78512 81152145 ~ 81152633 (-) True G302910
TU343707 lncRNA downstream 101337 81129514 ~ 81129808 (-) True G302904
TU343706 lncRNA downstream 107069 81123710 ~ 81124076 (-) True G302903
TU343702 lncRNA downstream 123501 81107444 ~ 81107644 (-) True G302899
TU343802 lncRNA upstream 11322 81242985 ~ 81243306 (-) True G302989
TU343803 lncRNA upstream 11904 81243567 ~ 81243779 (-) True G302990
TU343814 lncRNA upstream 18234 81249897 ~ 81250118 (-) True G303001
TU343824 lncRNA upstream 22339 81254002 ~ 81255054 (-) True G303007
TU343834 lncRNA upstream 32523 81264186 ~ 81264827 (-) True G303015
XM_036975305.1 mRNA downstream 192778 81012098 ~ 81038367 (-) False LOC110520656
XM_036975306.1 mRNA downstream 192778 81012098 ~ 81038367 (-) True LOC110520656
XM_036975309.1 mRNA downstream 246762 80979138 ~ 80984383 (-) True LOC110520654
XM_036975310.1 mRNA downstream 322796 80905040 ~ 80908349 (-) True LOC110520653
XM_036975301.1 mRNA downstream 357021 80803030 ~ 80874124 (-) True LOC110518808
XM_021598650.2 mRNA upstream 644958 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975328.1 mRNA upstream 735467 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA upstream 736332 81967995 ~ 81979522 (-) True slc23a3
XM_036975332.1 mRNA upstream 762388 81994051 ~ 82038179 (-) False LOC110510426
XM_036975330.1 mRNA upstream 762388 81994051 ~ 82040699 (-) False LOC110510426
TU343486 other downstream 508522 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 509464 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 547959 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 722848 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 810000 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 789725 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 791166 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1066093 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1513581 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 1599707 82831370 ~ 82851751 (-) False G304204

Expression Profile