RNA id: TCONS_00030341


Basic Information

Item Value
RNA id TCONS_00030341
length 7968
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_015023
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43272241 ~ 43282798 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCAGCATCTCTTCAggcaacaaataaaaaagcacacaGATTTCGAGTGACACAGACCTTGCTTTAATACAGACAGTTCCACTGTACAGTACGAAGTTATTTACATTCTTCGATGTAAATGAcctatttacaaacaaaaaacaacaacagatgaGCCGTGAAACATGGGTGTGAGTCAtaacttaaataaatacataacagtCAGAGATCGGACGCCACTGGAGTCCAAATGACATGATATGAATCAACTACTGAATCTAaatgagaaaacacacacacacacacgcttcatGTCTACATATAATAATACACCACACagactcactctctctctctcacatacacacctGAAGTGTGCAAACATGTTAAAGGGTGTTTCATCCCAGAAGAGTTTGTAAAAAAGCATTCAGAAACACAATAGAAAACATTTCTATCGCTCGTCAAGGCTGTGAGGTTGTGTACTATATATGGCATAATGGATAATCGAGGccagagtgtcttctttccaattaTACATCAACTGTGAATGTTGACCAAATTATTCCAATagcatctggatgcagccttcatgatgcaagctgagactgcatcactcagcgatgcaatgtcagacacaatgcactcaatggagtgagtgacgtcactgtgatgggcggggttaggggtggggttagatgagcGCATTAAGGCCCTATTTACTCTAATGCACTTTAGTTTGAAAACAgttaagttttgctatggttacaccatccgtccacactacgccggagtttgcGAGCGCCGAAAATGAACGTTTTttaaacgctggagaggctgttttcattctgaaacgctgctgctctgtctcagtgtggatgtgggaaaacggagacatctgaaacggaggcggggctgctgacattcgctatctgattggggcttttgtgtcattgcgtattttccccttattcgtcaagcccctatcacatgactataacacatggctttaacgctaccggaagacagcagaccagccttcactgtaaacaacaacacggacacagaaacattagcgttgtttgcactattgtctgttttaggtgccattgtgcagttattcatttgttacgtttagtaacaactcgacctcgtcgtctgtccacaaaaatacctctcttgctttctttgccatcgcgttcattgttcagccggcgtttgttgactaacaataaccaaatgccgagcgagacacatgcttcctgtttatactagaacgcgcctGCCCAGAGTGCGCGCATGGTcatgtgatatacgtttttggtagcgtagtgtggacggagatatgttctgaaacgctgggtgaaacgctagtgtggatcgtttttgatctaaaatgaattagcatgtttctagcatgaattagcatgatgttagcatgtttctagcatgaattagaatgttgttatcatgtttctagcatgcattagcgtgttactagcatgattctagcatgaattagcatgttactaacatgattctagcataaattagcatgttgtaagcatgaatatagcatgaattagcatgttactagcatgattctagcataaattagcatgtactagcatgattctagcatgaattagcatgttactagcatgattctagcataatttAACATGtactagcatgattctggcatgaattagcatgttactagcatgattctagcataatttAACATGtactagcatgattctggcatgaattagcatgttactagaatggttctagcataaattagcatgtactagcatgattctagcatgaactagcatgttactagcatgtttctagcatgaattagcatgttgttagcctgtttctagcatgaattagcatgttgttagcatgtttctagcatgaattagcatgttgctagcatgaattagcatgtgactaacATGATCCTAGCATAAATTAACATGTACTGggatgattctagcatgaattagcatgttactagcatgattctagcatgaattagcatgttgttagcatgtttctagcatgaatagcatgttgttatcgtgtttctagcatgaattagcaagttgctAGCATAATTAGtatgttactaacatgattttagcataaattagcatgttgttagcatgattatagcttgaattagcatgttactagcaagattctagcataaattagcatgtactgggatgattctagcatgaataagcatgttactagcatggttctagcatgaattagcatgttgttagcatgcttctagcatgaattagcatgttgttagcatgtttctaacatgaattagcatgttttcaaactcaaacgcactagtgtaaacggggcctaaagagcactggatgcagctcagattgcactgtgCTAGGTCAGCATCCAGACTCCCGTcaattattcagcaactgttaatgttttagcttgggaaggtcatttttgagaaagtgcctctgacggTGAGGGAGAGAAGGACACCGATATAGTCTCAGAAAGCCTTCTCATTTTGCCTGCTGCCTTCATCATAATTTAAAACACATAAACTCATGAGACACTTGGCTTTCAAGTCGTATACTTTCTAGGACATCACATTAATGTGTTCCTGTGTTTCTATATGGAAAATCAAATATTGAGCACAATACAATTGTGTTtctcatgacttcataatgtataactttttatattgtaACACGTAACTTccccttttaccacagtaaagctcaaagtgtcttctgtCCGATGACACCCAGTTTGTGTTTGTAGCTGACTGGAGTCAGCAGCTGCTACTATTTAAACTTCGGTAGGTGTAAATCTCAAAATCGAGGTTAAAATCGTAAGTTGTTGACCTGCGAAAATCGGAAgaacacacaaagtgctgcagaaACACTGGTGAATGTAAAGGTATAGACACATGTTCATCTAGTAGCCTTGTTCAACTTAGTTTGAGTTGTTATAGCGCTCAGCTCTCTCTTAATTCCTTGAACTCACAATCATGAGCTCAACAAAGCAGTCAATAGTCATATAAACATAATGAGACGCTTCGAAATACTGCAGCAGTCCTGCTTCACTCTGACTGTCAACTAGAttaaaggtgcagcaggtgatGGTCTTCAGATacatgtgttgttgtgctggctgaaactctcttcacattccaatagttaCAAGATACTAAAGTTGGAGGACAAACTTCATGGTggtttttaagtgtaaataactgtattttatgaattttcattttatttatgaagTTTGAAACAGTCAGCATAGATAAGTACatatatgttagcatgtttctagtatagattggcatgtttcttggtaggtggttgctagggtgttctgagtggttgctaaagcgttgctaggttgttgctaaggtgttgctaggcggttgctaaagtcttctgagtggttgctaggcagttgctaacataatatagtatgattctagcatgaatttgcatgttactagcatgattctagcatgacatAGTATGCtactagcatgcttctagcataaattagcatgttgttagcatgattatagcatgaattagcatggcATGGTACTAGCatgttctagcatgaattagcaagttactagcataattctagcatgaattagcatgttactagcatgtttctagcataaattagcatgttgttaaaatGATTATAGAATgtattagcatgtaactagcatcaattagcatgttgctagaatgtttctagcataaattggcatgttgttagcatgattatagcatgaattagtatgctactagcatgcttctagcataaattagcatgttgttagcataaattagcatgttgttaaaatgattataaaatgtattagcatgttactagcatgaattatcatgttactagaatgtttctagcataaattggcatgttgttagcatgattctagcatacattagcatgttgttagcatgattatagcataaattagcatggtatggtactagcatgattctagcatgaattagcatgtactagcataattctagcatgaattagcatgtacaagcatgtttctagcatgaattagcatgtttctagcatgaattaggcGGAGCTTATTATCTCCATGCCACCTCATTTCACTCTGATTAGTAGAATTTAtagagcatcatgggtaatgtagtctATCAGCACAAACTACATTATTATGATGTTTTAGGAATAAACGGAATTAAAGTGAACAGATGAGATCAATAACAGCATATATAATCTCAGAGCTCAAACATGGAGAAAAGGAATGAGTTTATACTTCCAGAACATGACTGTTGCACTCGATATCACTCAAATTGAATTTCTGACCAATAAGATTTCATTATGGGCGGAGCTAAACTAAGACAAACCCACAAACTTACATAATTATCATTGGCAGTGTTTAAAGGGAGTGGGCGGGGCTTAAAATAACTGTGTCACCTTACTGTGCACTCAGATTGGTGTAATTTtgtacagcatcatgggtaatgtagtttttcagCACAAACTACAGTAATACCATGATTGTTTTGAAAATTAGTGGAATTAAAGTGAACAGATGAGTTCAATAACAGCATATATAATCTCAGAGCTCAAAAtatggagaaaatgaatgagtttataCTTTTAGAACTTGACTGTTGCACTTGATATTATTTAAATGGAATTCTTGACCAATAAAACTTCATTATGGGCGGGGCTAAACTAAGATAAACCCACAAATTTACATAAATATCATTGGGAGTGCTTAAAAGTAGTGGGTGGAGCCTAATATCTCCATGCCACCTCACTTCGCTCTCTGATTGGTGTAATTTTGtagagcatcatgggtaatgtagtttttcagCACAAACTACATTATTACCTTGATTGTTTTaagaatacattaaattaaagtgaACAGATGAGTTTAACAACAGCATATATATCCTCAGAGCTCAAATGTGGACAAGATTGATGAGTTTATACTTCCAGAAGCTGACTGCTACACTCTGTGTCAGGTAAATTAAATTCTGACCAATGAGATTTCACTATGGGCGGGGCTAATTTAAGACAGACCCACAAGTTTACATAAATATCACTGGCAGTGCTTAACGGGAGTGAGTGGAGCTTAATATTGACTCTGATAGATGGAGTTTAatacagcatcatgggtaatgtagtttttgaGACTTCACTGTGGGCGGAGCTAAACTAGGACAGCTCCTCAGATTTACATAAAAGAAAGCACTTTAATTACGCCACTCCTGGTTAAGATTGCGAGTTGGATCAATTAGATCCATCTGTTAAATACCTGTTTTAAAGGAATGTTTCATGTTAATACAAGCTCCTCTCCAATACTGCAGACACAGATtaactcatatttatttacatatgcaAATCAAACACTATTCTGCAGTTCCTGATTGGCAGGTCCAGATCATTCCAGAATCAAATGTCCTGTAGATTCGTGTGTGAAACAGGAATGATATGTGATTCCCGGGAATGCTGGTGGAGTGTTAAGGCATCCAGGAAGAGGACAGTGAGACAGTTATTCGTGTCTGATTGGTCAATACAGCTGATTGTCACTACAACAGGTTAAAGGTCTCGTAATGCGTTTGGCCTTTGAGTGATGGTGCATTTCTATTATCGCCGGCTCTGTTCTCAAACCTAGTGAGCtccctacatagacagcatctgAAGGCATCACATAGACTCTACACCTTTTAATATGACAGCATGTGTTGTAAAGTGGGCTGAATGAAATGAAAGAAGTTATTATGATTATTGGTAATTTAATGCTACAATCAAAATAGTTCAATTACTTTCTTGTTTTCTAGCTGAATATAGCAGAATTTGTACATTTTGACTgtttagataaatattttttactcGATGCATTGCAAGTTTCAAAATAAttccattatttttgtttattttatcaatttattacTTTTGATCAATTTCTTAACCTAAAATCTGATGACATTTGCTTCAGTTAAAAGGATCTGCCAAATGAACAaatgtatgaaataaataaaagaaagactcAAATAACGAATTAGTAAAATTTAATTAACTATGTATTTATCTTAAATGAAATGCAAGTCATTTGAGAtaaatttgcattaatttaaCTGTCCGTTGGAGGCactgcataatatatatattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgctacagcggaatgaaccgccaactcatccagcaagtttttacgcagcggatgcccttccagccgcaacccatcactggcaaacatccacacacacattcacacacacacactacggacaatttagcctacccaattcacctgtaccgcatgtctttggacgcgaaggcagggagaacatgcaaactccacacagaaacaacaactaagccgaggttcgaaccagcgaccttcttgctgtgaggtggacagcactacctgctgcgccactgcctcaccccatTCAGAGAGAcgccatatatatatactggtcagcaagtgaagtgctatgctggtaaacctcactcctctgacatcttaaaaaagGTCATGCTCCAGAGACAGATGCAAGAGGCCATGGTCTTGAGCCTCCTTGTTATGCGGAGATAtgctccttgttagagcaaccaactcccattcAAACAGacaccagctcagagcgggttgggtgggtAGGACCAGCCGGGTTACACTTACacttacacacttacacacacttacactaacacacacttacacttacACTTACACTTACACTTACActtacacacacccacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatattatactTTGCATATTAgccttattaaataatttattcctaataatttattttactaattactTGATCAAATTTTTGTTATTATCAATAATACCATTAATTAAGTCGTCATTGCTTTAATGGACTGTATTTTAccaaatgcataaatataaaacGTAGATTTTAATctacaatttaaaatgttattttaagatattgtattttacaagttattaaatagaaataaaatgatcaaactgAAACAGAAATCTCTATTGAGTCTACGATGGCAGATGTCTATGCAGGTGTTATACATGAAGACAGCTCACTAGGATTTGAAACACAGCCAAACTTCAAGACAACATGATACACAGTGTAAAGtgagatttcaaaatgcactAAAAAATTTCAGAGCGGGACTGTATATCATCTATGGGAAGTGTTTAGACTGTGACCAATgctattattgactaatataatcGTCCCTTCCCACACGGGCTGAAAGACATCAGCAGAAATTAAAAGCTGTTTCACAGAAGGATCAATTATTGATGTCAGAAATATTTGTAGAATTTAAGCTTTAAATGTTGGTTTCACCTTGTCTTCAAAGGTTGAGTTTTGATTTGGCCTGAAGATATTTGAGTCCACCCCTTTTGTGATATTGGTACGATCCTTCTGTGGCGGCTCCTGATAAATCTCCCCTTTATAGGTAGTACAGTAGTTTCCCCCAAAGCGATGATGTCACAAAGGTGGATAGCAGAAGGCACTGTGATTGGCTGAGTTGCCACTGGTGGGCGGAGTATGGCTGGTTCCAGTCATGATGGAGTGTCTGATTGGCTGGATGAACTGCATCACGTCTGAGCGAggcatctgattggctgaggagCGTCTAGGCTTCACTGGCTGTGCTGTTACGACTCAAATCCCTGATTCCCTGCAGGATCCGCTTCATATGGCCAACTTTAGTCACACCGAGGTCCT

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030340 lncRNA downstream 20491 43250524 ~ 43251750 (-) False XLOC_015022
TCONS_00030339 lncRNA downstream 20491 43250524 ~ 43251750 (-) True XLOC_015022
TCONS_00029585 lncRNA downstream 288554 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00029583 lncRNA downstream 347496 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00030338 lncRNA downstream 427035 42843109 ~ 42845206 (-) True XLOC_015015
TCONS_00029589 lncRNA upstream 147007 43429805 ~ 43524057 (-) False XLOC_015024
TCONS_00029798 lncRNA upstream 225072 43507870 ~ 43524057 (-) False XLOC_015024
TCONS_00030342 lncRNA upstream 225316 43508114 ~ 43542056 (-) False XLOC_015024
TCONS_00030343 lncRNA upstream 422117 43704915 ~ 43711293 (-) True XLOC_015028
TCONS_00029598 lncRNA upstream 457902 43740700 ~ 43748060 (-) False XLOC_015029
TCONS_00029588 mRNA downstream 46117 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029586 mRNA downstream 267885 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029584 mRNA downstream 326276 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029582 mRNA downstream 343262 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029579 mRNA downstream 620626 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029590 mRNA upstream 234251 43517049 ~ 43542568 (-) True XLOC_015024
TCONS_00029591 mRNA upstream 264667 43547465 ~ 43552252 (-) True XLOC_015025
TCONS_00029592 mRNA upstream 329381 43612179 ~ 43639331 (-) False XLOC_015026
TCONS_00029593 mRNA upstream 331487 43614285 ~ 43639331 (-) True XLOC_015026
TCONS_00029594 mRNA upstream 371440 43654238 ~ 43657468 (-) False XLOC_015027
TCONS_00029587 other downstream 241353 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029580 other downstream 593761 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 676857 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 1099013 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 1900263 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029605 other upstream 766849 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 776194 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 2672281 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 2737079 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029642 other upstream 4117391 47400189 ~ 47400307 (-) True XLOC_015054

Expression Profile

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