RNA id: TU344178


Basic Information

Item Value
RNA id TU344178
length 992
lncRNA type intronic
GC content 0.43
exon number 2
gene id G303300
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81415138 ~ 81422251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagctcggggatttgaacttgcaacctttcggtaactagtccaactctctaaccactaggctaccctgccgtgaTGTGGACGACGGACAGGGGGAAACACAGCAGAACCCGGGGGATGAATCATGACGTAAGGAAAGGAAGGCTGCTGATATCTTCCTCTCCAACCAAGGTGGATGAATTGAGAAGGTTTAGCAGATGTTCAGGAACAGTGGCCCTTGTCTCCCAAACTGTCTAGTCTGATCTAAAGGGGTGTCGTGTTGTGTTGTATCAGATGTCCAGTGTAACACCCGCTGGCTCCCTGGGGTCCGGCCTGTACCCCTACTGCAACCCTAGTCTTATCCGTCATCTAACACCACTTTACTGTAACCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCCgtcatctaacaccactatactgtaacCCTAGTCTTATCCATCATCTAACATCACTATAATGTAACCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCGTATCcatcatctaacaccactatactgtaacCCTAGTCGTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCCATCATCTAACACCACTTTACTGTAACCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCCATCATCTAACATCACTATAATGTAACCCTAGTCTTATCCATCATCTAACACCACTTTACTGTAACCCTAGTCTTATCCATCATCTAACATCACTATACTGTAACCCTAGTCTTATCcatcatctaacaccactatactgtaacCCTAGTCTTATCCATCATCTAACACCAATATACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344175 lncRNA downstream 5697 81408548 ~ 81409441 (-) True G303299
TU344158 lncRNA downstream 34174 81377360 ~ 81380964 (-) True G303282
TU344150 lncRNA downstream 44047 81369608 ~ 81371091 (-) True G303277
TU343905 lncRNA downstream 75805 81338703 ~ 81339333 (-) True G303075
TU343834 lncRNA downstream 150311 81264186 ~ 81264827 (-) True G303015
TU344185 lncRNA upstream 13985 81436236 ~ 81436699 (-) True G303306
TU344232 lncRNA upstream 89343 81511594 ~ 81512478 (-) True G303350
TU344244 lncRNA upstream 110467 81532718 ~ 81533494 (-) True G303359
TU344251 lncRNA upstream 119638 81541889 ~ 81568573 (-) True G303361
TU344260 lncRNA upstream 148836 81571087 ~ 81571722 (-) True G303370
XM_036975305.1 mRNA downstream 376771 81012098 ~ 81038367 (-) False LOC110520656
XM_036975306.1 mRNA downstream 376771 81012098 ~ 81038367 (-) True LOC110520656
XM_036975309.1 mRNA downstream 430755 80979138 ~ 80984383 (-) True LOC110520654
XM_036975310.1 mRNA downstream 506789 80905040 ~ 80908349 (-) True LOC110520653
XM_036975301.1 mRNA downstream 541014 80803030 ~ 80874124 (-) True LOC110518808
XM_021598650.2 mRNA upstream 454370 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975328.1 mRNA upstream 544879 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA upstream 545744 81967995 ~ 81979522 (-) True slc23a3
XM_036975332.1 mRNA upstream 571800 81994051 ~ 82038179 (-) False LOC110510426
XM_036975330.1 mRNA upstream 571800 81994051 ~ 82040699 (-) False LOC110510426
TU343486 other downstream 692515 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 693457 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 731952 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 906841 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 993993 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 599137 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 600578 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 875505 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1322993 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 1409119 82831370 ~ 82851751 (-) False G304204

Expression Profile