RNA id: TCONS_00030342


Basic Information

Item Value
RNA id TCONS_00030342
length 760
lncRNA type read_through
GC content 0.49
exon number 3
gene id XLOC_015024
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43429805 ~ 43542568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCGTGTGAGCGTTTGTGCGTGCAAGCGTTTGTGCATGCAATTGTTTGTGCGTGCAAGCGTTTGTGCATAAACAAACACTTGCACGCACAAACGACTGCACGCACAAACgcttgcacgcacacacaaaatctCGCAGGCACAAACGCTTGCACGCACAAAAGCTTGCACGCACACAAAAACGCTCACTCCATGCACAAATGCCCGAACGCATGCACTCACACATATGCAAACGCTCGCACGCACAAATACTTGCACGCACCACACAAACACGCAACCACAAACTCTCACACAAAACACTTGCGCACACGTACAAACACACACTAGAACAGGATCTCAGTTTACCTTCGGCCACATTGTACAGAGCTCCATGCTCTCTGAAACCGGAGAAGgattaataactaaataattcACTCTCTCATTTAGATTAGGCCttccggacacacacacacacacacacacacacacacacacactttggcccGCTTCCTCTTATTTGCTTTTGGCCACACTGAAAGTAAACAGTAATATGAGAAGTGCGAGTCTAACAGGAATGATCTTGATGTGGTTGCACAGGTGATGAAGATGCTTCAGTCGGACCAGTCATCATCATCAAACTCAGACGAATCATCCTCAGAGTCGCTGCACTCCACGGCGATGCGGCGAGACAGAATGGCCGCCACATCATTACCATTGTGATCCCGCTTCTCCTGCTCTCGTTGCTCCTCCACTTTGCGCAGGCTATTGGAGATGGAGCCTCA

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043412 macromolecule modification biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030341 lncRNA downstream 225316 43272241 ~ 43282798 (-) True XLOC_015023
TCONS_00030340 lncRNA downstream 256364 43250524 ~ 43251750 (-) False XLOC_015022
TCONS_00030339 lncRNA downstream 256364 43250524 ~ 43251750 (-) True XLOC_015022
TCONS_00029585 lncRNA downstream 524427 42962095 ~ 42983687 (-) True XLOC_015018
TCONS_00029583 lncRNA downstream 583369 42921169 ~ 42924745 (-) True XLOC_015016
TCONS_00030343 lncRNA upstream 162859 43704915 ~ 43711293 (-) True XLOC_015028
TCONS_00029598 lncRNA upstream 198644 43740700 ~ 43748060 (-) False XLOC_015029
TCONS_00030344 lncRNA upstream 355884 43897940 ~ 43901052 (-) True XLOC_015031
TCONS_00030345 lncRNA upstream 1461745 45003801 ~ 45007057 (-) True XLOC_015035
TCONS_00029614 lncRNA upstream 1615446 45157502 ~ 45244708 (-) False XLOC_015036
TCONS_00029588 mRNA downstream 281990 43213527 ~ 43226124 (-) True XLOC_015021
TCONS_00029586 mRNA downstream 503758 42996968 ~ 43004356 (-) True XLOC_015019
TCONS_00029584 mRNA downstream 562149 42938754 ~ 42945965 (-) True XLOC_015017
TCONS_00029582 mRNA downstream 579135 42919279 ~ 42928979 (-) False XLOC_015016
TCONS_00029579 mRNA downstream 856499 42629535 ~ 42651615 (-) True XLOC_015012
TCONS_00029591 mRNA upstream 5409 43547465 ~ 43552252 (-) True XLOC_015025
TCONS_00029592 mRNA upstream 70123 43612179 ~ 43639331 (-) False XLOC_015026
TCONS_00029593 mRNA upstream 72229 43614285 ~ 43639331 (-) True XLOC_015026
TCONS_00029594 mRNA upstream 112182 43654238 ~ 43657468 (-) False XLOC_015027
TCONS_00029595 mRNA upstream 112772 43654828 ~ 43659779 (-) True XLOC_015027
TCONS_00029587 other downstream 477226 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029580 other downstream 829634 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029578 other downstream 912730 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029546 other downstream 1334886 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029535 other downstream 2136136 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029605 other upstream 507591 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other upstream 516936 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029620 other upstream 2413023 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029625 other upstream 2477821 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029642 other upstream 3858133 47400189 ~ 47400307 (-) True XLOC_015054

Expression Profile

//