RNA id: TU344654


Basic Information

Item Value
RNA id TU344654
length 2090
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G303662
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81987106 ~ 81992999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCATGTTACCAGCACTAAGAGCCCCTAGACCATGCCACCATGATACCAGCCCTAAGAGCCCCTAGACCATGCTACCATGATACCAGCCCTAAGAGCCCCTAGACCATGCTACCATGTTACCAGCCCTAAGAGCCCCTAGACCATGCTACCATGTTACCAGCACTAAGAGCTCCTAGACCATGCTACCATGATACCAGCCCTAAGAGCTCatagaccatgttaccatgttaccagCACTAAGAGCCCCTAGACCATGCTACCATGTTACCAGCCCTAAGAGCCCCTAGACCATGCTACCATGTCATGGATGGttgaagcttgaccccagtgatgtactggcccgtacgcactaccctctgtggcaTCTTGCTGTCGGATGCCAAGGAAACAACTTGCCTTCATTTCATATTAACCTTTAAACTGGTCAACACATGTATTTTCCTTCAATGCTATGTTTATAGACCCCTTAgaccatgataccatgataccatgataccatgataccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccttagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccatgataccatgataccatgataccatgataccagcaCTAAGAGCCCCTAGACCATGATACCAGCACTTAGAGCCCCTAgaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagctcctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcgctaagagcccctagaccatgataccatgataccagcaCTAAGAGCCCCTCACccatgataccatgataccagcactaagagctcctagaccatgataccagcactaagagctcctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcactaagagctcctagaccatgataccagcactaagagctcctagaccatgataccatgataccagcactaagagcccctagaccatgataccatgataccagcaCTAAGAGCTCCTAGACCATGATACCAGCACTAAGAGCTCCTAGATcatgataccatgataccagcaCTAAGAGCCCCTAGACCATGATACCAGCACTTAGAGCTCCTAGATcatgataccatgataccagcaCTAAGAGCTCCTAGACCATGATACCATCATACCAGCCCTGTGAGCCCCTATACCATGCTACCAGGCCTAAGAGCTCCTAGACCATGCTACCATGATACCCGCCCTAAGAGCCCCTAGACCATGCTACCCTGTTACCAGCCCTAAGAGCCCCTAGACCATGATACCATGTTACCAGCCCTAAGAGCCCCTAGACCATGCTACCCTGTTACCAGCCCTAAGAGCCCCTAGACCATGCTACCATGTTACCAGCCCTAAGAGCCCCTAgaccatgataccatgataccagcCCTAAGAGCTCatagaccatgttaccatgttaccagCACTAGGAGCTCatagaccatgttaccatgttaccagCACTAGGAGCTCCTACACCTTTTTCATGTGACTCGTTGGGGTTCTCTCAAACCCCCTCACCCAATAAAGTGTGTTTGCGTCAAGGTTGCCAGGTTTTGTGATGATTCCTGGTTGCCAGGTGTTGTGATGATCCCGCATGAATAGACTAACTAACCCTCAACCCTGTACTATACTCTATGTAATAGTCCCCTTGAACCAAACGTGACCGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344639 lncRNA downstream 1681 81984177 ~ 81985757 (-) True G303660
TU344451 lncRNA downstream 82628 81904536 ~ 81904810 (-) True G303534
TU344441 lncRNA downstream 97550 81888759 ~ 81889888 (-) False G303526
TU344442 lncRNA downstream 97550 81888759 ~ 81889888 (-) True G303526
TU344438 lncRNA downstream 99269 81887934 ~ 81888169 (-) True G303523
TU344679 lncRNA upstream 36330 82027929 ~ 82028363 (-) True G303677
TU344680 lncRNA upstream 36802 82028401 ~ 82029545 (-) True G303678
TU344711 lncRNA upstream 103126 82094725 ~ 82095096 (-) True G303708
TU344712 lncRNA upstream 104555 82096154 ~ 82096594 (-) True G303709
TU344713 lncRNA upstream 105084 82096683 ~ 82097649 (-) True G303710
XM_036975328.1 mRNA downstream 7916 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA downstream 7916 81967995 ~ 81979522 (-) True slc23a3
XM_021598650.2 mRNA downstream 99719 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975305.1 mRNA downstream 949071 81012098 ~ 81038367 (-) False LOC110520656
XM_036975332.1 mRNA upstream 2452 81994051 ~ 82038179 (-) False LOC110510426
XM_036975330.1 mRNA upstream 2452 81994051 ~ 82040699 (-) False LOC110510426
XM_036975331.1 mRNA upstream 2452 81994051 ~ 82040699 (-) True LOC110510426
XR_005051397.1 mRNA upstream 31236 82022835 ~ 82023180 (-) True LOC118964332
XR_005051398.1 mRNA upstream 31680 82023279 ~ 82023723 (-) True LOC118964333
TU343486 other downstream 1264815 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 1265757 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 1304252 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 1479141 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 1566293 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 29789 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 31230 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 306157 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 753645 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 839771 82831370 ~ 82851751 (-) False G304204

Expression Profile