RNA id: TU345887



Basic Information


Item Value
RNA id TU345887
length 752
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G304635
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83482576 ~ 83483327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcagcaccaagtcattacaaaaacattagacagacaacatgaaaaactacaagtaatcaagtaaaaaccatagaattcacaagagtataacaaaatcaaaaacagccaattaaaaacattgacaggtcagggaatcagcctcaaaatccaagatccttcatcagtgatttaaaaacaccaatcgggacaagttcttccagtttaaaagtattttgtaaggtgttcctaGGCGATGGTGCAGaggacataaaagcccttttaccaaattcagttcagacatttggaacagttagcaggataaagccCTGAGAAACGGAGAGACGACCCAACACAtctctgaacaataaaaatggccaaataaaaaggtagtaaacccaaaatggctttgtaaataaaagtataccagtgaccgagcctacgagtgactagagaaggccagccaaccctggtatacaaagtgcagtggtgcgtaagggtacCAACCAAGCAACTGTTAAAAGGTCAAAGTTGACCCCCTGTGGATGCTGACACAAGGCTGTGTGGAATGCCTCTGGGCACCCTGGGTGGGAAACGAATACTTAAGACGCTTAGCGGTGTGGAAAGTCAACATCTCCTGAGAACTGCTGCCAAGCCAACGGGTGGTTGACTCAAATAATTCACTTCTTTTCCCTCAACCGTCTCATGAGACGGACATTGACGTGCCTCAGCAGAATACAAGGgttccataatttgcaaataaattcattaaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345800 lncRNA downstream 10333 83467511 ~ 83472243 (-) True G304562
TU345771 lncRNA downstream 59954 83422381 ~ 83422622 (-) True G304534
TU345755 lncRNA downstream 112351 83370019 ~ 83370225 (-) True G304519
TU345752 lncRNA downstream 113596 83368766 ~ 83368980 (-) True G304516
TU345687 lncRNA downstream 169788 83311349 ~ 83312788 (-) True G304461
TU345891 lncRNA upstream 428 83483755 ~ 83484076 (-) True ttll4
TU345892 lncRNA upstream 3576 83486903 ~ 83491045 (-) True G304638
TU345893 lncRNA upstream 8619 83491946 ~ 83493505 (-) True G304639
TU345952 lncRNA upstream 134039 83617366 ~ 83619684 (-) False G304687
TU345951 lncRNA upstream 134292 83617619 ~ 83619684 (-) False G304687
XM_036965260.1 mRNA downstream 288870 82905486 ~ 83193706 (-) False LOC110504940
XM_021584685.2 mRNA downstream 734842 82744854 ~ 82747734 (-) False LOC110505453
XM_036975336.1 mRNA downstream 896494 82297732 ~ 82586082 (-) False pard3bb
XM_036975345.1 mRNA upstream 126 83483453 ~ 83539175 (-) False ttll4
XM_036975348.1 mRNA upstream 126 83483453 ~ 83539354 (-) False ttll4
XM_036975344.1 mRNA upstream 126 83483453 ~ 83539355 (-) False ttll4
XM_036975346.1 mRNA upstream 126 83483453 ~ 83539355 (-) False ttll4
XM_036975347.1 mRNA upstream 126 83483453 ~ 83539355 (-) False ttll4
TU345446 other downstream 531220 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 630825 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 734838 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1168495 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 1459125 82022829 ~ 82023451 (-) True G303665
TU346425 other upstream 472417 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 596694 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 697724 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 798156 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 821977 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile