RNA id: TU346077



Basic Information


Item Value
RNA id TU346077
length 508
lncRNA type intronic
GC content 0.46
exon number 2
gene id G304782
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83696995 ~ 83739984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaccatactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacacaaccagactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacacaaccagactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacagaaccatactatcctagtctggtcccagatctataacagaaccatactctcctagcctggtcccaggccTAGAACAGAACCATattatcctagcctggtcccagacctataacggaacaatactatcctagcctgctcccagatctataacagaaccatactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacagaaccatacaaccctagcctggtaccagatctataacagaaccatacaatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346046 lncRNA downstream 8100 83671197 ~ 83688895 (-) False G304756
TU346045 lncRNA downstream 8100 83682035 ~ 83688895 (-) True G304756
TU346069 lncRNA downstream 16589 83678336 ~ 83680406 (-) True G304776
TU346042 lncRNA downstream 29941 83646979 ~ 83667054 (-) True LOC118964336
TU346053 lncRNA downstream 51457 83645109 ~ 83645538 (-) True G304763
TU346227 lncRNA upstream 125104 83865088 ~ 83866045 (-) False G304896
TU346229 lncRNA upstream 125104 83865088 ~ 83866045 (-) False G304896
TU346228 lncRNA upstream 125766 83865750 ~ 83866045 (-) True G304896
TU346248 lncRNA upstream 153367 83893351 ~ 83898110 (-) True G304913
TU346260 lncRNA upstream 166645 83906629 ~ 83906828 (-) True G304924
XM_036975349.1 mRNA downstream 53628 83639090 ~ 83643367 (-) True LOC110505466
XM_021598087.2 mRNA downstream 67714 83626569 ~ 83629281 (-) True LOC110520669
XM_036965263.1 mRNA downstream 84116 83546922 ~ 83612879 (-) True abcb6b
XM_036975346.1 mRNA downstream 157640 83483453 ~ 83539355 (-) False ttll4
XM_036975354.1 mRNA upstream 175888 83915872 ~ 83986617 (-) False abi2a
XM_036975355.1 mRNA upstream 175888 83915872 ~ 83986617 (-) False abi2a
XM_036975356.1 mRNA upstream 175888 83915872 ~ 83986617 (-) False abi2a
XM_036975357.1 mRNA upstream 175888 83915872 ~ 83986617 (-) False abi2a
XM_036975358.1 mRNA upstream 175888 83915872 ~ 83986617 (-) False abi2a
TU345446 other downstream 745639 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 845244 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 949257 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1382914 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 1673544 82022829 ~ 82023451 (-) True G303665
TU346425 other upstream 215760 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 340037 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 441067 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 541499 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 565320 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile