RNA id: TU346515



Basic Information


Item Value
RNA id TU346515
length 552
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G305130
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84066113 ~ 84066664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctagtcacaacaggttttaataaagaaattaggcacatttgggcagtcttcatacaacattttgaacagaaatacaatggttcattagatcagtctaaaaatgtgcacatacactgatgccatctagtggccaaaatctaaattgcacctgggctggaataatacattatggcctttctcttgcatttcaaagatgatggtgcaAAATAAATCCAAAAGAACAGTTGGTTttgtctttgtattatctttttccAGATCtggtgttatattctcctacattccttttacatttccataaactttagtgtttcctttcaaatggtaccaagaatatgcatgtccttgtttcagggcctgagctacaggcagttagatttggttatgtcattttaggcgaaaattgaaaaaaggggctaATCCTGAAGTAGGTTGGTGATTGATTTCTAATATCATTACATTAACAGTTAAAGTGAATAAATTCAATAAGATGAATACAAATAATTTACTAAACTTGCGACTGCAAATCATTTAACTTGCGACTGCAACTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346491 lncRNA downstream 40209 84025427 ~ 84025904 (-) True G305114
TU346484 lncRNA downstream 51856 84013493 ~ 84014257 (-) True G305109
TU346483 lncRNA downstream 52940 84012645 ~ 84013173 (-) True G305108
TU346482 lncRNA downstream 53695 84012174 ~ 84012418 (-) True G305107
TU346481 lncRNA downstream 54075 84011832 ~ 84012038 (-) True G305106
TU346520 lncRNA upstream 2655 84069319 ~ 84069595 (-) True G305135
TU346521 lncRNA upstream 2942 84069606 ~ 84069836 (-) True G305136
TU346532 lncRNA upstream 5607 84072271 ~ 84072519 (-) True G305140
TU346524 lncRNA upstream 6302 84072966 ~ 84079384 (-) False LOC110504983
TU346544 lncRNA upstream 21333 84087997 ~ 84088291 (-) True G305149
XM_036975355.1 mRNA downstream 79496 83915872 ~ 83986617 (-) False abi2a
XM_036975362.1 mRNA upstream 7274 84073938 ~ 84220262 (-) False LOC110504983
XM_036965273.1 mRNA upstream 166063 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_021598092.2 mRNA upstream 238639 84305303 ~ 84308440 (-) False LOC110520676
XM_036975363.1 mRNA upstream 246051 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA upstream 246051 84312715 ~ 84624269 (-) False LOC110516739
TU346425 other downstream 79596 83955744 ~ 83986517 (-) True abi2a
TU345446 other downstream 1114757 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 1214362 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 1318375 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1752032 82297756 ~ 82314081 (-) True pard3bb
TU346535 other upstream 13357 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 114387 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 214819 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 238640 84305304 ~ 84308414 (-) True LOC110520676
TU346793 other upstream 317611 84384275 ~ 84387134 (-) True LOC110516739

Expression Profile