RNA id: TU346532



Basic Information


Item Value
RNA id TU346532
length 249
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G305140
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84072271 ~ 84072519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtatcaaatacttgttctccccactgtatgggGAGAACAAGTTCCATTATAAATCCTGTTCCATCATAAATGCTGTTCCATTATAAATGCTGTTCCATCATAAATGCTGTTCCATCATAAATGCTGTTCCATTATAAATGCTGTTCCATTATATATGCTGTTCCATTATGTATGCTGTTCCATTACATATCCTTTaccattatatacagtgccttggcatttttcctattttgtttcattacaacctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346521 lncRNA downstream 2435 84069606 ~ 84069836 (-) True G305136
TU346520 lncRNA downstream 2676 84069319 ~ 84069595 (-) True G305135
TU346515 lncRNA downstream 5607 84066113 ~ 84066664 (-) True G305130
TU346491 lncRNA downstream 46367 84025427 ~ 84025904 (-) True G305114
TU346484 lncRNA downstream 58014 84013493 ~ 84014257 (-) True G305109
TU346524 lncRNA upstream 447 84072966 ~ 84079384 (-) False LOC110504983
TU346544 lncRNA upstream 15478 84087997 ~ 84088291 (-) True G305149
TU346760 lncRNA upstream 155122 84227641 ~ 84228492 (-) True G305323
TU346792 lncRNA upstream 240237 84312756 ~ 84315138 (-) False LOC110516739
TU346802 lncRNA upstream 267303 84339822 ~ 84340038 (-) True G305359
XM_036975355.1 mRNA downstream 85654 83915872 ~ 83986617 (-) False abi2a
XM_036975362.1 mRNA upstream 1419 84073938 ~ 84220262 (-) False LOC110504983
XM_036965273.1 mRNA upstream 160208 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_021598092.2 mRNA upstream 232784 84305303 ~ 84308440 (-) False LOC110520676
XM_036975363.1 mRNA upstream 240196 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA upstream 240196 84312715 ~ 84624269 (-) False LOC110516739
TU346425 other downstream 85754 83955744 ~ 83986517 (-) True abi2a
TU345446 other downstream 1120915 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 1220520 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 1324533 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1758190 82297756 ~ 82314081 (-) True pard3bb
TU346535 other upstream 7502 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 108532 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 208964 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 232785 84305304 ~ 84308414 (-) True LOC110520676
TU346793 other upstream 311756 84384275 ~ 84387134 (-) True LOC110516739

Expression Profile