RNA id: TU347080


Basic Information

Item Value
RNA id TU347080
length 490
lncRNA type intronic
GC content 0.38
exon number 3
gene id G305570
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84729605 ~ 84731089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatataaaatctatagaagagacagacatgcttataggggaggtgttgctgtatatattcagtcatatccctgtaatgcttatgggggaggtgttgctgtatatattcagagtcatatccctgtaatgtttataggggaggtgttgctgtatatattcagtcatatccctgtaatgtttataggggaggtgttgctgtatatattcagtcatatccctgtaatgtttataggggaggtgttgctgtatatattcagtcatatcactgtaatgtttataggggaggtgttgctgtatatattcagtcatatccctgtaatgtttataggggaggtgttgtatatattcagagccatatccctgtaatgtttataggggaggtgttgctgtatatattcagagccatatccctgtaatgcttagagaagatcttaagtgttattgaagtgttgtggttgcaggttcacttggcacatctaaagccttttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347007 lncRNA downstream 23663 84676464 ~ 84705942 (-) True G305534
TU347025 lncRNA downstream 26646 84702426 ~ 84702959 (-) True G305552
TU346887 lncRNA downstream 124708 84604681 ~ 84604897 (-) True G305431
TU346885 lncRNA downstream 126024 84603347 ~ 84603581 (-) True G305429
TU346881 lncRNA downstream 138433 84590957 ~ 84591172 (-) True G305426
TU347043 lncRNA upstream 36570 84767659 ~ 84787870 (-) False G305563
TU347044 lncRNA upstream 36570 84767659 ~ 84787870 (-) False G305563
TU347050 lncRNA upstream 36570 84767659 ~ 84773855 (-) False G305563
TU347052 lncRNA upstream 36570 84767659 ~ 84805087 (-) False G305563
TU347053 lncRNA upstream 36570 84767659 ~ 84822714 (-) False G305563
XM_036975363.1 mRNA downstream 105336 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA downstream 105336 84312715 ~ 84624269 (-) False LOC110516739
XM_021598092.2 mRNA downstream 421165 84305303 ~ 84308440 (-) False LOC110520676
XM_036965273.1 mRNA downstream 428248 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_036975362.1 mRNA downstream 509343 84073938 ~ 84220262 (-) False LOC110504983
XM_036975366.1 mRNA upstream 105786 84836875 ~ 84868307 (-) True xrcc5
XM_036975373.1 mRNA upstream 173249 84904338 ~ 84907876 (-) False LOC118964339
XM_036975374.1 mRNA upstream 173249 84904338 ~ 84907876 (-) False LOC118964339
XM_036975375.1 mRNA upstream 173249 84904338 ~ 84907876 (-) True LOC118964339
XM_036975376.1 mRNA upstream 181463 84912552 ~ 85062818 (-) True LOC110520668
TU346793 other downstream 342471 84384275 ~ 84387134 (-) True LOC110516739
TU346797 other downstream 421191 84305304 ~ 84308414 (-) True LOC110520676
TU346768 other downstream 428629 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346587 other downstream 547570 84181051 ~ 84182035 (-) True G305189
TU346535 other downstream 649121 84080021 ~ 84080484 (-) True LOC110504983
TU347103 other upstream 26853 84757942 ~ 84758775 (-) True G305585

Expression Profile