RNA id: TU347103


Basic Information

Item Value
RNA id TU347103
length 774
RNA type TUCP
GC content 0.50
exon number 2
gene id G305585
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84757942 ~ 84758775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGCGGAGGGGATGTCCTTAGCCCCTGGCGGAGGGGATGTCCTTAGCCCCTGGCGGAGGGGATGTCCTTAGCCCCTGGCGGAGGGGATGTCCTTAGCCCCTGGCGGAGGGGATGTCCTTAGCCCCTGGCGGAGGGGATGCCCTTAGCCCCTGGCGGTTCACACTGCTGGTCACACTGCTGTTCACACTGCTGTTGACACTGCTGTTGACACTGCTGTTCACACTGCTGTTGACACTGCTGTTCACACTGCTGTTCACACTGCTGTTCACACTGCTGTTGACACTGCTGTTCACACTGCTGTTCacactgctgtctgttcacactgctgaAAATGACACTTTTCTCCTTATTCCATATACGGGCctatagggccccggtctaaagttcCCCGTTCTACTGAAAGCCCATTTCAATCTAGGAAATATCCAGTTTTGTTAGATATTAAGCCACAACATGCGCTGTCATTCCATCTGCTGTGTAACCGAATACCAGGCCATAGTTTAGTATATACCATTGTATGTCTacggggctctggtcaacagtggtgcactatgtagggaatagggtgccacttggaaGGCACCATGTGTTCTACTCTGTCTTAGTACTGTTAAGGATACTGACTTTTATTATTAATGTGAACCACAAGCGTCTCAGACAGTCCTTCTCCCTGAATCACACCATCATACTCATCCTTCTACTAAACTACAGAACTACCTTCCTAATGCCATCATGTCTGTTTTGATGTTGTCTGTCTgttaggcctactgta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347080 lncRNA downstream 26853 84729605 ~ 84731089 (-) False G305570
TU347007 lncRNA downstream 52000 84676464 ~ 84705942 (-) True G305534
TU347025 lncRNA downstream 54983 84702426 ~ 84702959 (-) True G305552
TU346887 lncRNA downstream 153045 84604681 ~ 84604897 (-) True G305431
TU346885 lncRNA downstream 154361 84603347 ~ 84603581 (-) True G305429
TU347043 lncRNA upstream 8884 84767659 ~ 84787870 (-) False G305563
TU347044 lncRNA upstream 8884 84767659 ~ 84787870 (-) False G305563
TU347050 lncRNA upstream 8884 84767659 ~ 84773855 (-) False G305563
TU347052 lncRNA upstream 8884 84767659 ~ 84805087 (-) False G305563
TU347053 lncRNA upstream 8884 84767659 ~ 84822714 (-) False G305563
XM_036975363.1 mRNA downstream 133673 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA downstream 133673 84312715 ~ 84624269 (-) False LOC110516739
XM_021598092.2 mRNA downstream 449502 84305303 ~ 84308440 (-) False LOC110520676
XM_036965273.1 mRNA downstream 456585 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_036975362.1 mRNA downstream 537680 84073938 ~ 84220262 (-) False LOC110504983
XM_036975366.1 mRNA upstream 78100 84836875 ~ 84868307 (-) True xrcc5
XM_036975373.1 mRNA upstream 145563 84904338 ~ 84907876 (-) False LOC118964339
XM_036975374.1 mRNA upstream 145563 84904338 ~ 84907876 (-) False LOC118964339
XM_036975375.1 mRNA upstream 145563 84904338 ~ 84907876 (-) True LOC118964339
XM_036975376.1 mRNA upstream 153777 84912552 ~ 85062818 (-) True LOC110520668
TU347081 other downstream 27084 84729605 ~ 84730858 (-) False G305570
TU347082 other downstream 27084 84729605 ~ 84730858 (-) True G305570
TU346793 other downstream 370808 84384275 ~ 84387134 (-) True LOC110516739
TU346797 other downstream 449528 84305304 ~ 84308414 (-) True LOC110520676
TU346768 other downstream 456966 84281483 ~ 84300976 (-) True si:dkey-230p4.1

Expression Profile