RNA id: TCONS_00029627


Basic Information

Item Value
RNA id TCONS_00029627
length 578
RNA type mRNA
GC content 0.52
exon number 2
gene id XLOC_015042
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46019313 ~ 46058963 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACCAGTTTcaaacaccaccaccaccaccacagcAGCGAACGCGCTCCCTGTATTTGGCAAATCTTTAGTCGCAGAATCTTCTGCCCCAAAGTTTGGGGAACCGGCAACAAAAGAGCAAACGCTGGTGACGTCTACTTTTACCTTTGGAAAGCCAGAAGAGAAAAAGGACACCTCTGCACCCTCCAGTACATTCTTATTTGGTTCTTCTAAGGAAGCTGAGAAACCAACACCAAACCTAGGCTTCGCTTTTAGTGAGCCAGACCCTCCAAAGGATTTCCCCAAGCCTGCGCTTACATTTGGGAAACCTGCCGAGTCGACAGAACCCCCAAAGCCATCATTTGGTTTTGGACAGAGTTTGACAGCTCCAGCTCCGTCTGCAAACCCGTCCCCATTTGTCTTCAGTTCTGCTGCTCCTTCATCTGGCTTTGGCTCCGGACAGACTCCAATTTTCGGGCAAAGTGCGTCTCAACCCAGTGCTCCTGCGTTCGGATCAGCAGCACCTTCGTTTTCGGCCTCTGCCACCCCGGCTTCTACATTCGGAGCCAAACCCAGTTCTGCCCCTGTTTTCGGTCAGCA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0001525 angiogenesis biological_process
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-4581 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153).

Ensembl:

ensembl_id ENSDART00000167185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029626 lncRNA downstream 2354 46019877 ~ 46022808 (-) False XLOC_015042
TCONS_00029623 lncRNA downstream 25939 45993896 ~ 45999223 (-) True XLOC_015041
TCONS_00029619 lncRNA downstream 65007 45943054 ~ 45960155 (-) False XLOC_015039
TCONS_00029799 lncRNA downstream 334747 45689237 ~ 45690415 (-) True XLOC_015038
TCONS_00029614 lncRNA downstream 780454 45157502 ~ 45244708 (-) False XLOC_015036
TCONS_00030346 lncRNA upstream 380057 46412613 ~ 46420558 (-) False XLOC_015045
TCONS_00029633 lncRNA upstream 384250 46416806 ~ 46419781 (-) True XLOC_015045
TCONS_00030347 lncRNA upstream 459027 46491583 ~ 46492033 (-) True XLOC_015047
TCONS_00030348 lncRNA upstream 692303 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA upstream 704562 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00029622 mRNA downstream 7010 45991054 ~ 46018152 (-) False XLOC_015041
TCONS_00029621 mRNA downstream 39173 45983647 ~ 45985989 (-) True XLOC_015040
TCONS_00029618 mRNA downstream 64971 45856171 ~ 45960191 (-) False XLOC_015039
TCONS_00029617 mRNA downstream 374168 45375669 ~ 45650994 (-) True XLOC_015037
TCONS_00029616 mRNA downstream 490770 45375669 ~ 45534392 (-) False XLOC_015037
TCONS_00029628 mRNA upstream 3062 46035618 ~ 46037835 (-) True XLOC_015042
TCONS_00029629 mRNA upstream 34333 46066889 ~ 46088429 (-) False XLOC_015043
TCONS_00029630 mRNA upstream 34971 46067527 ~ 46091497 (-) False XLOC_015043
TCONS_00029631 mRNA upstream 58762 46091318 ~ 46091605 (-) True XLOC_015043
TCONS_00029632 mRNA upstream 185543 46218099 ~ 46219035 (-) True XLOC_015044
TCONS_00029625 other downstream 2283 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 64979 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 1962613 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 1962630 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 2994274 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 1367633 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 1383034 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 1535157 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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