RNA id: TCONS_00029628


Basic Information

Item Value
RNA id TCONS_00029628
length 717
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_015042
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46019313 ~ 46058963 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGCCCAGGCTCCCCCTCCAAGCACAAGTACTTTGTCGTACCCCTTGTCCAGCACCCCGGCTGCTAACAGTGCTGCTCTAGGAGGTGGCAAAATGAAGAGAGAAAGGGCCATCAGACCTTCATCCAAACGGCCTGATGATGAGGTTGCTGAGGAACCAGATCTGCCGCCAGCTTCTCTTCCCAGCAATTTCACTTTGCCAACATTTACTTTCTCCACTCCTCCTCCGACCTCCTCGCTCAAATCCAGCACAGCACCACTTATAACCGTCTCGGAGGAGCCAGCAGCGAATAAGCCGGCTGCACCATCCACACCACCATCTGCCCCCTTCACGTTCTCTTCACCTATCGTCAAGGCAACAGCTGCCAGCCCTCCATCTTTCTCTCCATCGTCTGGATTCACCTTCAGTGCACCTACTATGAAAATGGGTCCCTCTTTCTCCAATGGGAAAATTGTTCCATCAGTAGCACCAGTCAAATCAGTGGTCATTGAAGAAAAGGAGTTTGAAGGACCATTCAAACCTGCAAAGGTCTTAAAACAGGGCAGTGTGTTGGACATACTTAAGGGTCCTGGATTTGCATCCCCCTCTCAGAATTCGACTGATAAACCTTTACAGTCCacatcaacaacaacatcatctCCATTTTCTGGTTTTGGTGACAAGTTTAGGCCACCGGCAGGATCATGGAACTGTGGAACTTGCATGTTGCAAAACAAG

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0001525 angiogenesis biological_process
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-4581 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153).

Ensembl:

ensembl_id ENSDART00000163815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029626 lncRNA downstream 12810 46019877 ~ 46022808 (-) False XLOC_015042
TCONS_00029623 lncRNA downstream 36395 45993896 ~ 45999223 (-) True XLOC_015041
TCONS_00029619 lncRNA downstream 75463 45943054 ~ 45960155 (-) False XLOC_015039
TCONS_00029799 lncRNA downstream 345203 45689237 ~ 45690415 (-) True XLOC_015038
TCONS_00029615 lncRNA downstream 790910 45244185 ~ 45244708 (-) True XLOC_015036
TCONS_00030346 lncRNA upstream 374778 46412613 ~ 46420558 (-) False XLOC_015045
TCONS_00029633 lncRNA upstream 378971 46416806 ~ 46419781 (-) True XLOC_015045
TCONS_00030347 lncRNA upstream 453748 46491583 ~ 46492033 (-) True XLOC_015047
TCONS_00030348 lncRNA upstream 687024 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA upstream 699283 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00029627 mRNA downstream 3062 46025162 ~ 46032556 (-) False XLOC_015042
TCONS_00029622 mRNA downstream 17466 45991054 ~ 46018152 (-) False XLOC_015041
TCONS_00029621 mRNA downstream 49629 45983647 ~ 45985989 (-) True XLOC_015040
TCONS_00029618 mRNA downstream 75427 45856171 ~ 45960191 (-) False XLOC_015039
TCONS_00029617 mRNA downstream 384624 45375669 ~ 45650994 (-) True XLOC_015037
TCONS_00029629 mRNA upstream 29054 46066889 ~ 46088429 (-) False XLOC_015043
TCONS_00029630 mRNA upstream 29692 46067527 ~ 46091497 (-) False XLOC_015043
TCONS_00029631 mRNA upstream 53483 46091318 ~ 46091605 (-) True XLOC_015043
TCONS_00029632 mRNA upstream 180264 46218099 ~ 46219035 (-) True XLOC_015044
TCONS_00029634 mRNA upstream 383514 46421349 ~ 46566430 (-) True XLOC_015046
TCONS_00029625 other downstream 12739 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 75435 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 1973069 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 1973086 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 3004730 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 1362354 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 1377755 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 1529878 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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