RNA id: TCONS_00029633


Basic Information

Item Value
RNA id TCONS_00029633
length 410
lncRNA type lincRNA
GC content 0.32
exon number 2
gene id XLOC_015045
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46412613 ~ 46420558 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatatcttcttttttttttacttcttcatCCAGATCGATTCATACTAGTGTTATCAAGTGTACAGAGATTTTAAAGTTGTAAATGAAGAATTCAGATGCAAACCCTCAAATAATTTCAGACCTTTATCAATTTGATTATTCTGTACAAAGCCGAAAACCATCGAACTCCaatgtaggaaaacaaatactatggaagtcaatgGCTACCAACATTTCTCTAAACatctttttctttttgtgttcaacagaaaaagaaaaaactgaaataagTGTGTGAATCATGAgtgaataatgacagaattttcagctttCAGTTTAGAGTTTGgagtactgtccctttaagaatctGCTCAAACAGGAAGTTGCATTTCTAAAAATTCCAATGCTGGATTATATTGCAGTCGGCACTT

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000162659

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029626 lncRNA downstream 393998 46019877 ~ 46022808 (-) False XLOC_015042
TCONS_00029623 lncRNA downstream 417583 45993896 ~ 45999223 (-) True XLOC_015041
TCONS_00029619 lncRNA downstream 456651 45943054 ~ 45960155 (-) False XLOC_015039
TCONS_00029799 lncRNA downstream 726391 45689237 ~ 45690415 (-) True XLOC_015038
TCONS_00029615 lncRNA downstream 1172098 45244185 ~ 45244708 (-) True XLOC_015036
TCONS_00030347 lncRNA upstream 71802 46491583 ~ 46492033 (-) True XLOC_015047
TCONS_00030348 lncRNA upstream 305078 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA upstream 317337 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00030350 lncRNA upstream 579480 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA upstream 703907 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00029632 mRNA downstream 197771 46218099 ~ 46219035 (-) True XLOC_015044
TCONS_00029631 mRNA downstream 325201 46091318 ~ 46091605 (-) True XLOC_015043
TCONS_00029630 mRNA downstream 325309 46067527 ~ 46091497 (-) False XLOC_015043
TCONS_00029629 mRNA downstream 328377 46066889 ~ 46088429 (-) False XLOC_015043
TCONS_00029628 mRNA downstream 378971 46035618 ~ 46037835 (-) True XLOC_015042
TCONS_00029634 mRNA upstream 1568 46421349 ~ 46566430 (-) True XLOC_015046
TCONS_00029635 mRNA upstream 304430 46724211 ~ 46737822 (-) False XLOC_015048
TCONS_00029636 mRNA upstream 348485 46768266 ~ 46775562 (-) False XLOC_015049
TCONS_00029637 mRNA upstream 352237 46772018 ~ 46777963 (-) True XLOC_015049
TCONS_00029638 mRNA upstream 392491 46812272 ~ 46957968 (-) True XLOC_015050
TCONS_00029625 other downstream 393927 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 456623 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 2354257 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 2354274 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 3385918 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 980408 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 995809 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 1147932 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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