RNA id: TCONS_00030352


Basic Information

Item Value
RNA id TCONS_00030352
length 595
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id XLOC_015063
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47760897 ~ 47761491 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACTGCAATGGGACAGACGGTAGTTTGTTGATGTGTGTGCGTTCATGAGATTGTAAGTTCAAATTACTATTTATTGTTAGCtaaaaatgtgtatatgtatacttTCTAATATATACTGTTTTGTTCTACCTCAGTATTTTAAGATGCCTTAGCTAAAAGAGTTTGCTTGACAGATCTGTATAAATAGACTGTTAAAATCAATGTTTACAGCATATACTTATACAAATAATGCTAATTGAAACTATAAggtgtttatacatttataattagtATTCAAAGATACTGAAATCAGTTTATGTGAAGTATAGCAAATTGTATTATTAGATTATACAACATGTAGCGAGTTTACATGGCTGCTGTTTGTTATAACTGGTGCCTAGTGGCCATTAGCGGAATTACCTTGGATTATTCCCCATtcagtaatgtttatttattgtcattcaaGAATATTTGTTTAAGAGCTTTGTTTAATCTACtggtattgttttatttcagaaaccacacacacacaaatgcacccAAATACGCAAATCTAAATGCACTCCTAAATGTGTAAACTGTTTGAAGATGGGATTGAATAAATCAATGTGCAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029653 lncRNA downstream 210549 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030351 lncRNA downstream 587489 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 587526 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA downstream 587799 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030348 lncRNA downstream 996536 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00029800 lncRNA upstream 12426 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 170407 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 256215 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00030355 lncRNA upstream 423807 48185298 ~ 48186157 (-) True XLOC_015071
TCONS_00030356 lncRNA upstream 476159 48237650 ~ 48239011 (-) False XLOC_015072
TCONS_00029661 mRNA downstream 173178 47578811 ~ 47587719 (-) True XLOC_015062
TCONS_00029660 mRNA downstream 189089 47567969 ~ 47571808 (-) True XLOC_015060
TCONS_00029658 mRNA downstream 189100 47567555 ~ 47571797 (-) False XLOC_015060
TCONS_00029657 mRNA downstream 189441 47565616 ~ 47571456 (-) False XLOC_015060
TCONS_00029656 mRNA downstream 189441 47565616 ~ 47571456 (-) False XLOC_015060
TCONS_00029662 mRNA upstream 10168 47771659 ~ 47782586 (-) False XLOC_015064
TCONS_00029663 mRNA upstream 11524 47773015 ~ 47782916 (-) False XLOC_015064
TCONS_00029664 mRNA upstream 39059 47800550 ~ 47832853 (-) True XLOC_015065
TCONS_00029665 mRNA upstream 214425 47975916 ~ 47997424 (-) True XLOC_015067
TCONS_00029666 mRNA upstream 242200 48003691 ~ 48015928 (-) False XLOC_015068
TCONS_00029659 other downstream 193049 47567713 ~ 47567848 (-) True XLOC_015061
TCONS_00029643 other downstream 344492 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 360590 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1738018 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1800714 45955079 ~ 45960183 (-) True XLOC_015039

Expression Profile

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