RNA id: XM_021600245.2


Basic Information

Item Value
RNA id XM_021600245.2
length 1653
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110522121
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13047347 ~ 13049135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGGGATTGGAACTTGTTGGGGAGCATCTTAGAAGAGGTACATATTCATTCAACCATCGTGGGAAAAATCTGGCTAACCATCCTTTTTATATTCCGGATGCTCGTTCTTGGTGTGGCAGCAGAGGATGTGTGGGACGATGAGCAGAGTGAGTTTGTGTGCAACACGGACCAGCCTGGGTGTAAGAACGTGTGCTACGACGATGCATTCCCCATTTCTCTTATCCGATACTGGGTGTTACAAATCATTTTcgtgtcctctccctctctggtatACATGGGACATGCACTGTACCGTTTGAGGGCCCTTGAAAAAGAGAGACACAAGAAAAAAGCCTTCCTGAAAGCGGAGCTAGAGGGCGCTGAGCCCGTTCacgaggacagacagaggatagagagggagctGAGGAAGCTGGAGGAACAGAAGAGAGTAAGGAAAGCTCCACTCAGGGGCTCCTTGCTGCGCACATATGTTTTCCATATCTTGACGAGGTCAGTGGTGGAGGTTGGCTTCATAGTGGGACAATATGTGCTGTACGGAGTTGGACTGGATCCTTTGTACAAATGTGAGAGATTGCCTTGCCCGAACAGTGTGGATTGCTTTGTGTCCAGACCAACTGAGAAGAACATTTTCATGATCTTCATGCTCGTCATCGCTGGGGTTTCTTTGTTCTTGAATCTCCTCGAGATATTCCACCTGGGAGTGAAGAAAGTCAAACAAAGTCTGTATGGAAATAAAGGTACAGATGACGAAAGCTTATTAGTGTTCAGGTCCAAGAAAAACTCCATGGTCCAGCAGGTGTGTGTCCTCACAAACTCATCACCCCAAAAGATGATGCAACTCACTCAGACGGCCTACACAATGGTCCCTAACAGCCACGTGGATGCTATCCCCTTGTACCTGCATTCGGTAGCTCCTCACAACGATAGTGGTGGCACCAACGACTCAGAGCAGTACCTCAGACAGACTGAGCTCCAGTCCCTGCGACAGCTGAGGACTGTGGAGCACCActacaccctggaccagaggaACCACTCATGCAGCAGTGATGACTCCAACGGGCCTAAAGGCTCATGCCATCCCAGGCACGGCGGAGCACAGCCACGGCCTTCCCTAATGGCCAGCCATATGGAGATACCAGCAGCCCTGTGGAACCAGCTACGCAAGCAGAGCCGGGTCAGCGCTCTGCAGGATTACAGTGACATGAGTGATTCACCTGACAGTGGTCACTATCCCACGGGGAGGAAGGCTAGTTTCATGTCCCGAGGACTCTCTCAGACCAACCTGGACAGTCCTTCTGATAGCCCGAACTCCGGGAGTGGGACGGACACAGAGGCCAAGCGTATCGCCCAAGGAGAGAGCCCACCTATGACCCCGCCTCCAGCCAGTGGACGAAGAATGTCAATGAGCATGATTCTGGAACTGTCTTCAATCATGAAAAAGTGAGAACTGGCTGAGGGACCAGAAGGATCTGGGGACACTGATTACGAAGCAACATTCCCCTTCTAATTGCCTAATTGTATTCATAATAACATATGTATTGTGGATGAGCAGTAAACGCATTAGTAtagttacactgaacaaaaatagaaatgtatcatgcaattttactgagttacagttaacataaggacatcagtcaattgatagaaa

Function

GO: NA

KEGG:

id description
K07631 GJA10; gap junction alpha-10 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364006 lncRNA upstream 65017 12981778 ~ 12982330 (+) True G321219
TU364119 lncRNA upstream 73470 12973675 ~ 12973877 (+) True G321330
TU364117 lncRNA upstream 78038 12969090 ~ 12969309 (+) True G321328
TU364112 lncRNA upstream 81138 12965950 ~ 12966209 (+) True G321323
TU364045 lncRNA upstream 192761 12853920 ~ 12854586 (+) True G321256
TU364207 lncRNA downstream 59820 13108955 ~ 13109508 (+) True G321413
TU364216 lncRNA downstream 69593 13118728 ~ 13119147 (+) True G321422
TU364217 lncRNA downstream 70153 13119288 ~ 13119615 (+) True G321423
TU364218 lncRNA downstream 70525 13119660 ~ 13119874 (+) True G321424
TU364219 lncRNA downstream 71064 13120199 ~ 13120439 (+) True G321425
XM_036975662.1 mRNA upstream 1684 13034144 ~ 13045663 (+) False LOC110522103
XM_036975663.1 mRNA upstream 1684 13034144 ~ 13045663 (+) False LOC110522103
XM_036975661.1 mRNA upstream 1684 13034145 ~ 13045663 (+) False LOC110522103
XM_036975664.1 mRNA upstream 1684 13034145 ~ 13045663 (+) True LOC110522103
XM_036975667.1 mRNA upstream 65755 12928115 ~ 12981592 (+) False LOC110521046
XM_021598417.2 mRNA downstream 735579 13784714 ~ 13785790 (+) True LOC110520969
XM_021600257.2 mRNA downstream 742849 13791984 ~ 13801419 (+) True LOC110522126
XM_021600261.2 mRNA downstream 859184 13908319 ~ 13914582 (+) True LOC110522131
XM_021600266.2 mRNA downstream 885457 13934592 ~ 13954337 (+) False LOC110522133
XM_021600265.2 mRNA downstream 888288 13937423 ~ 13954337 (+) True LOC110522133
TU364003 other upstream 65796 12980400 ~ 12981551 (+) True LOC110521046
TU364001 other upstream 234982 12800836 ~ 12812365 (+) True LOC110522108
TU363815 other upstream 498233 12548470 ~ 12549114 (+) False LOC110522117
TU363816 other upstream 498274 12548470 ~ 12549073 (+) True LOC110522117
TU362050 other upstream 1669591 11376227 ~ 11377756 (+) True LOC110522079
TU364241 other downstream 93812 13142947 ~ 13143443 (+) True G321447
TU365525 other downstream 801152 13850287 ~ 13885503 (+) True G322645
TU368490 other downstream 3386118 16435253 ~ 16436634 (+) False G325389
TU371014 other downstream 5215155 18264290 ~ 18304442 (+) True G327705
TU371315 other downstream 5378019 18427154 ~ 18428907 (+) True G327995

Expression Profile