RNA id: XM_021600255.2


Basic Information

Item Value
RNA id XM_021600255.2
length 5926
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110522125
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13572893 ~ 13647267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGGCAGTTTCTTGTACATTAACCTAAAGTAGCAGGGGGTTTAGCGTCGTAAATGGGAAGCACACGCCACGGTGGAAAAGCGAATACTGTCTAGCTAACTTCCATTTACAACATGGGTTCCACGTCGATTTCGTGTTTGTGGATTACATTTTGCATTCATTTATGTTGTTTTATGGACACTGGAAAAGCACAGAATGCGAAAGAAGTGATTCTGTTGGATTCCAAGGCGCAGCAGACAGAGCTGGAGTGGATATCCTATCCTCCTAGTGGGtgGGAAGAGATCAGCGGGTTGGATGAAAACTACACCCCCATTCGCACATACCAGGTTTGTCAGGTCATGGAGCCGAATCAGAACAACTGGCTTCGGACTAGCTGGATAGAGAAGGGCGATGCCCAGAGGATTTTTGTGGAACTGAAGTTCACCTTGAGGGATTGTAACAGTCTACCCGGTGTGGTGGGCACGTGCAAGGAGACATTCAACTTGTATTATCAGGAAACCGATTCGGAAGTCGGCAGGAATATACGAGAGAACCAGTACGTGAAAATTGACACAATCGCAGCAGACGAGAGCTTCACCCAGGGGGAcctgggagagaggaagatgaagcTGAATACAGAAGTACGCATCATTGGGCCGCTGTCCAGACGAGGGTTTTACCTGGCCTTCCAGGATGTAGGGGCATGCATCGCTCTGGTCTCTGTCAAAGTTTATTACAAGAAGTGCTGGTCCATCATTGAGAACCTGGCCACTTTCCCAGACACAGTGACGGGGTCAGAGTTCTCCTCTCTGGTCGAGGTCGAGGGCACATGTGTCAGTGACGCCGAGGAGGAGGCCGACAACTCTCCCAAGATGCACTGCAGCGCAGAGGGGGAATGGCTGGTGCCTATAGGGAAATGTATATGCAAAGCGGGATTTCATCAGAAGGGCGATGCATGTGAACCATGTGGCCGTGGGTTCTACAAGTCCTCGTCCCAGGACCTGCAGTGTTCGCGCTGCCCAGCACACAGCTACAATGATCGGGAGGGCTCGTGGCGCTGCGACTGTGAGGACGGCTACTACCGGGCACACTCAGACCCACCCTCTGTGGCCTGCACAAGACCTCCCTCGGCGCCACAGAACCTGGTCTACAACATCAACCAGACCACGGTCAGCCTGGAGTGGAGCCCGCCGGCCGACACGGGCGGTCGCAACGACGTGACCTACAGGATTATGTGCCGGCGCTGCAGCTGGGAGCCCGAGGAGTGCGTAGCGTGCGGGGGGAACGTGGGATACTCCCCCCAGCAGGCGGGATTAGTGGACACCTACGTGAGCGTGGTGGACCTGCTGGCCCACGCCAACTACACCTTCGAGGTTGAGGCAGTCAACGGGGTATCTGACCTCAGCCGCACCCAGAGGCTGTTCGCCGCAGTCAGCATCGCCACCAGTCAAGCAACTCCCTCCCAAGTCAGTGAAGTCATCAAGGAGAGAGTGCAGCAGCGCAGCATCCAGCTCTCCTGGCAGGAGCCTGAGCAGCCCAATGGGGTCATCACCGAATATGAGATCAAGTACTACGAAAAAGACCAGAAGGATCGCATCTACTCCACAGTGAAGTCCAGGTCCACGTCAGCCACAGTGAACAACCTGAAGCCCAGCACTGCCTACGTGTTCCAGATCCGAGCCTTCACAACGGCCGGCTACGGCACCTATGGACCCCGGCTGGAGGTCACCACCAAGGAGGAGGCCTCAGCAGCCACCATTGTCTCCAGCGAGCAGAATCCCGTCATCATCATTGCGGTGGTGGCCGTGGCGGGGACCATCATCCTGGTCTTCATGGTGTTCGGCTTCATCATTGGGAGAAGACACTGTGGCTACAGCAAGGCGGACCAGGAAGGAGACGAGGAGCTGTATTTCCAATTTAAATTTCCAGGCACCAAAACATACATTGACCCTGAAACCTACGAGGACCCGAACAGGGCTGTCCATCAATTTGCCAAGGAGCTGGACGCGTCCTGCATTAAGATTGAGCGAGTTATTGGAGCAGGGGAGTTTGGGGAGGTGTGTAGTGGACGGATGAAGCTCCCAGGGAAACGGGACATGTCAGTGGCCATTAAAACCCTGAAGGTGGGCTactcagagaaacagaggagggacTTCCTGTGTGAGGCCAGCATTATGGGCCAGTTTGACCATCCCAATGTTGTCCATCTGGAGGGAGTGGTGACCAGAGGCAAACCGGTGATGATTGTGATTGAATATATGGAAAACTGCTCGTTAGATGCTTTTCTCAGGAAACACGATGGTCAGTTCACAGTGATCCAGTTAGTGGGGATGCTGCGGGGCATAGCAGCGGGGATGAGATATCTCTCCGACATGGGGTATGTCCATCGAGATCTGGCTGCACGAAACGTACTTGTCAACAGCAATCTCGTATGTAAAGTGTCTGACTTCGGCCTGTCAAGAGTGATCGATGACGATCCCGAGGCTGTCTACACAACAACGGGTGGAAAAATACCTGTTCGATGGACAGCAATGGAAGCCATCCAGTACCGTAAATTCACTTCCGCTAGTGATGTGTGGAGTTATGGCATTGTCATGTGGGAGGTCATGTCCTATGGGGAACGGCCTTACTGGGACATGTCCAATCAAGACGTGATAAAGGCCATAGAGGAGGGGTACCGCCTCCCTGCTCCCATGGACTGCCCTCCAGGCCTGCACCAGCTAATGCTGGACTGCTGGCAGAAAGACAGGGCCGATCGTCCCAAATTTGATCAAATAGTTGGCATCCTTGATAAGATGATTCGCAATCCCAATACCTTGAAAACCCCGGTGGGAACCTGCACGAGACCGATTAGTCCCCTGTTAGATCAGAGCACACCAGACTTCACTACTTTCCGCTCGGTTGGGGAGTGGCTGGAGGCCATCaagatggagagatacagagacaactTCACCGCCGCTGGCTACAGCTCACTGGACTCTGTGGCCAGGATGTCAATCGAGGATGTGATGAGCTTGGGGATCAGTTTAGTGGGCCATCAGAAGAAGATCATGAGCAGCATACAGACTATGAGAGCCCAGATGCTGCATCTCCATGGCACAGGAATCCAGGTGTGATGACAGACTACAGTGCCCCCTGTGGACGGGCTATCTAGAGCAGCACTAAGGCAAAACCTCCCAGGATAATCATTGAAAATCATGTGACGTGACGTGACGTCGTCTCCTATCTGACTATTTTTTTTCACGGATGTTTCGGAATGAAATAATTCCTGTGATCCTTGGCGAAGGATTTGAACCCCTCTTTAGAACGGGTACTAAAGGAGAGAATGACAGAATACTACCTGAACATGATGCCGAACTTCAAACGCTCTGAGGAACTCTCAACAACATATCAAATAGAGATGGAGCTTTGGAAAACGAGTTTGATACGTATTAACTTGTTCTTTTAACCTCGTGAATGATTTTATTTGTGCACCATGAAAATGGatttcacttttttttaaaaaggaaAAAGAAAGAAGATTTCAAACAATTTGTTTATTCCCCTTGCGGTGTTTTTTTCAGTATTTTCTTTACTAGTTTGTTCATTTTGTTAGTGTCAGGAGCCACAGTGATATGGTGTGGTACGTACAGTagtctttcattttttttttccccttacaatttttttcttcttttttttctattttggACTTGACAACAGGGTAAACGCTCCCATCCAAAAGGATGAGTATGGTGTCTGAACATTTTGGTGGAGACGATTTCGAGGTACTTTGACCAGTTTGTCTTGAGACACTACTGGCTGTTTTAACTGTTTGCAGTGAGTTGTGTTTTTTTCTTCCTGATGTTTTTGAAGTGAACAACGGTATGCTGCACCTCAGATAAGTGACTTCGGAGATAGTAGTGTTCTCTCGGTCGTTTGAAGCTTACAGGAGTGCTTTGCTGTACGCATTTGCCTGAACACAGATGCTCCCATTTTGTGATGGAAAATCAGATTTCAAATTTGTATGTTGAAATTTTGAAACAGTATGACACCAATCATTCAAGTTGATTTGAGATTGATCACAACTTTTATATGTAATATCAAGCATCAAAGTGGCAACATTCTTTACATGTTCATGTTTACCACATGAATCATTTGATCCTATTGTCCAATGTGCTTTCAATCAGAACTTTGATTTCCGTTGTTGAATTCATCAATTGAACGTTTCCACAGATTGCTCTACAGAAGGATTGTATTGAAACTTCATGAGATGACTCGATCCACTGCAAATGGTGTTGCCAttgaaatgccccccccccccccccccccccccttcaaatgGTATTTGTTTCGTATTTTAGTGAATACGGTGGTTGAGGGTGAATCTAGGAAATGCTGTGTACGCACTTTCTAGAAGTAATAATGCCTTAAAATGTGTTAGACTAATGTATTGACATTCTTTTTAGGCTATTCAATGGCAATGTTTTTTTGCagttcagtgagacaggtcttGTGTCTGAATGGAAAGGTTCCCCATTTTCTTTGTGGTAACATTTcatgcaggttgacgtttattgttaCGAATCTttccctggaggcagaactgagcagtttccgctagatgggccagctgcaaaatCCAAATTGACTATatcgtaaaaattcatgaaaacaaacattCGCTTTTTGGTCTTAAATTAAGGTacgggttagacattagggttagcagtgtggttaaaggaaagaaaagggaaagggggatacctagtcagttgtacaactgaatgccttcaactggaatgtgtcttctgcatttaacccaacccctcaatgctagggttaaggttagagtttaggtttaaaatcaggttttatgactttgtggttgtgcaagctagtgaccaccctgcagagctgcctccaagGCAAGACTCATGAAAGTAAATGCCAACCTGCTCCATTCATCCTGAACTTGAAAATCATGCACACTTGCGTATGTTGAATTTCACGATTGATGATTGACACAGTCAATGTAGGGTAGAAGATTGACCAAACAAAGCAATAATTAGTCCAGGTAGAAATGGTCCTACTCAGAGATTTGAAGGTGCTAGGTTTTACAGAAATGCCTGTTGTGCTGGGATAATATACCGGTATACTTAAGTTATCAAATCATGAAATAGTAATGCCACTTACGAAATGGTATCCCCGAATATGCTAATGACTTAATAACAAGGTCACAGTGTATGACTATATTTGGAACATATGGCTGTGACCGTGGGGTGAAATGACATTCAAGCAGCAGAGAGGCACACGCATTAGTCATGACATCATCCCCACCATTGCACCGCACTTAGTTTGAAGGCCTTCAGTTTGGCATGAGGTACTTACAGCATCTAATAACCCAATATCATGATATATAGAAAATCCTGATACTCCTTATTACGATGATCATACTGTGAAAATCACTTACCGTCCCAGCCCTAGCCATTCAGGAGAGCCAGGCAAACAGTATGGGTGATGTAACATGCATAAAAGTGTttccatgcccccccccccccgcccccccaccccacccttttTTTTTACTTCCCTGCCCCTTTGTATGCTAATCAGGACACAGAGATTAGGAATGGGCTCTGCAAAGATGTGCTAAAAAGCCAACCTAATGGTGCCATCAGTCTTCACCTTTTACAACAAAATGAATGTTATCATAAATGTCTTCAGCATTGTATTATTCTCTGACGAATGGTTGGTTCACTCATTTCTTTCTCATTAAAAGTAAGGAAAATATAGATATTTCCAACTGcagttgtgtaaaaaaaaaaatagggggAGGTTTCACAGTATTttgaacatacagtaccagtcaaaagtttggacacgcctagtcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacatcaaaactatggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU365290 lncRNA downstream 3 13572159 ~ 13572890 (-) False G322423
TU365289 lncRNA downstream 3 13572260 ~ 13572890 (-) False G322423
TU365291 lncRNA downstream 3 13572323 ~ 13572890 (-) True G322423
TU365279 lncRNA downstream 800 13570476 ~ 13572093 (-) False G322421
TU365278 lncRNA downstream 800 13570558 ~ 13572093 (-) True G322421
TU365437 lncRNA upstream 75628 13722888 ~ 13723132 (-) True G322563
TU365454 lncRNA upstream 88708 13735968 ~ 13736179 (-) True G322580
TU365618 lncRNA upstream 151989 13799249 ~ 13799623 (-) True G322732
TU365619 lncRNA upstream 176566 13823826 ~ 13871569 (-) True G322733
TU365719 lncRNA upstream 286163 13933423 ~ 13933691 (-) True G322832
XM_036975672.1 mRNA downstream 375658 13175568 ~ 13197235 (-) False LOC110522122
XM_036975671.1 mRNA downstream 375660 13175568 ~ 13197233 (-) False LOC110522122
XM_036975673.1 mRNA downstream 375661 13175568 ~ 13197232 (-) False LOC110522122
XM_021600246.2 mRNA downstream 375672 13175568 ~ 13197221 (-) False LOC110522122
XM_036975674.1 mRNA downstream 375674 13175568 ~ 13197219 (-) False LOC110522122
XM_021600258.2 mRNA upstream 162488 13809748 ~ 13821911 (-) True LOC110522127
XM_021600259.2 mRNA upstream 178540 13825800 ~ 13827498 (-) True LOC110522128
XM_036975679.1 mRNA upstream 181796 13829056 ~ 13855278 (-) False dse
XM_036975678.1 mRNA upstream 181796 13829056 ~ 13858174 (-) True dse
XM_036975680.1 mRNA upstream 210924 13858184 ~ 13916995 (-) True LOC110522132
TU364719 other downstream 390324 13173776 ~ 13182569 (-) True LOC110522122
TU364641 other downstream 590130 12981777 ~ 12982763 (-) False lyrm2
TU364397 other downstream 1025376 12546483 ~ 12547517 (-) True LOC110522115
TU363650 other downstream 1254495 12318003 ~ 12318398 (-) True G320883
TU363167 other downstream 1679320 11891871 ~ 11893573 (-) False LOC110522088
TU366076 other upstream 481229 14128489 ~ 14187171 (-) True G323167
TU367449 other upstream 1606604 15253864 ~ 15255008 (-) True G324432
TU368604 other upstream 2372168 16019428 ~ 16104688 (-) True rnf217
TU368823 other upstream 2692072 16339332 ~ 16340707 (-) True G325696
TU369118 other upstream 2999495 16646755 ~ 16662881 (-) True G325960

Expression Profile