RNA id: XM_021600336.2


Basic Information

Item Value
RNA id XM_021600336.2
length 4748
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110522175
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15698804 ~ 15710542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttcagtcataagagacggtagcagcaccattatgtacaaaataagttacaaacaatgcaaaaaaaacaaaatagcacaatttgTTACGGGCATGTAAAACGTCAGACATTCTCTTCGGCGCCATCTTAACAATGCTGTCAATCTCCCCATTTGACAAACCCTGAGAATTCCAAACAAGGACCAGAGGGGTTGGGAGACAGAATAGGCGTAGCCCCTCTTTAAACTCCTTTCTCAGCCCCTCAACCCCAAAGGCTGAAGTGGAACCTAACAATACTAGAAGTTTGGTTAGTCCCATTTCAAATGAGAACATTTAGGCAGTATCACAGTGGAGAAATGATTATAAAAACCCAGCCACGTACACTTTAAGCCCTAGCTCTCTCGAAGCCCCGAgtgaatatgttttttttttttggtatccAGTTGAGCCAGACTTGCATTGCATAAACACAGGAAATGACAGACTCAAACATCTGCAACATTTCGATATAGATCTCTGGGCTTTTAACCCTTTAATTGCTCCTGCTACAATAAGCTACAGTTGGTTGTTTACTCCGAGTGTGCTTGCTCATCACAGCATGTAGGCAGTAGGAACAGGGAATGAGTTTAATCTTGATTCAGTGGCTATATAGGCTATTATGTCTGTGTTATGGAGACATTATAAATGATTGCATTCTTAAATGGTCATCATCAAAGGATTTGGTTAACTCAATCATTTGCATCTCTAGATTGAAAGCAACATGCAGGGAGCTTAGATTACTATGTGTTATCGATATTTGCATCAATTATTGTCTTTGCATTGGGGACACTGTAAACTATTATGGTAATATTGTATTCAGATGCTTGACTTCTCCACGCATAAATTATTCAAATAagctttttcttgtttttttctacTCACTGTGGGAGTACAATGCTTTTCCTGGTCTacatcccaaataaatgcattaTTCCGAACTGAAGCCAGCTGGTGGAGAGAGCCTTTTTACAAGCTACCATTCCATGGAGGAATAGAAAGTGGACATGATAAGGCGTCTTGGTATAACTCCAAAAGAATTCACAGAGCTTTGTCCCCAGATGTGAATACTTTAAAGTTAGTAGGCTAAACAGAACACGTATTTGATTGGTTATAGTCGACTGTGTGTGGATCACCGGATCTTTAGTGACAAAAAGTTGAGACGGTTGACAGTAAAACAATAGTAGACATTCTCTGCGCCTTGCGCAGCTTGGAACAGTTAGTACAGACGTGTAGCCAACAGTCCAGGTGCGCGTTTTGGAAATGGAGCGAAACAATGAAATCTTTTCTCTTTGGAAGTTTATTCTTTTTCGTATCGGCACTCGATTATAAATGTAATGGGAATACAAACGGACTTAGCAAGCCAACCACGAGTGTCGAGAAACATGGCTTGCGTTATCATTTTCCATGCGTAATGGGCAAATAACACCAGCTAGAAAGAAGCACCATATTTTACAGGGCCGTGGACAGCGGTAGTGATGATTTCAGCTGGTGGAGTGATTACGGGCCACCTTGCTGCACTGAAGAGGCAGGACTCGGCCCGCTCCCAACACCATCTGCCCATCCAGTCCCCAGCCCCAGGAGAGGCCCAGGAGAAGAGGAGGGCCAAGCGTAAACCCAGAGCCGACGTAGTGGTGGTCAGGGGAAAGATCCGCCTCTACTCTGCCTCTGGGTTCTTCCTCATCCTGGGTGTATTGATCCTGCTGATGGGCATCGCCATGGCCGTGCTGGGCTACTGGCCACACAGAGAGGATCTCGTAGCGGCCAACGCCAAGCTATCCACCAACGACACCAGGGTGACCCGGGAGGAAAGTGGTACACTGGCCCAGTTCTTTGAGCAGCACCTGCACTCTGAGAAGATGAAGATGCTGGGCCCCTTCACCATGGGTATCGGTATCTTCATCTTCATCTGTGCCAATGCCATCCTGCACGAAAACAGGGACCGGGAGACCAAGGTGATCCACATGAGAGACATGTACTCCACCGTCATCGACATCCACAGCCTGAGGATCAAAGAGCACAAGTACATGAATGGGGCCTACTCCGGCTCTTATGGGGAGCATGAGGTCAGGACCTATGAGAACCAGTGTGCCTCCAAGCTTGCTGCTAACACCCTGCTAGGGTTCCCCAGCATGGGGAACAATGTGAGGGTGTCTCGCAGGGCCAGCTCTACGGAGGACGAGGAGGGCCTTCTCAATGAGGCCAAAGGGGGGCATGGTCTCCTGCCTTCACTCTACAGAGAGCGCTCTGGCTCCATCTTTGGTCTGCAGCATGAGGGCAGCCGCCACAGGGACGAGAGGAGCAGCTTCCCCAAGAGATGCCAGACCAGGTCAATCGTCTCGTCCTCGATCAGCGCTTTCACCCTGCCCGTTATCAAGCTCAACAACTGTGTGATCGACGAGCCTGACATGGACAACATCACAGAGGACCTGGAGCACATTCGGGTTAGGTCCCGACCCCCCTCTGTGGAGTCCCTGGCTGTGCCTGTTCCGGCAGACATTGCCAAAGCCTACAAACCTCCCGACGTCATGCTCCTCAGGAGTAACTCAGCCACAGAGTCCCACTCCTTCTCGTCCTCTCATAGCTCTCTGTCCCCAGGCTCTGCCAGTGGGAGGTACCTGTCCCCCGGGACTGCCCGCAAGGACTTCGGCTCTAACAACTCCCTCCACATGCTTTCTTCTCACTCTAAGTCTCTGGACCTGGATCGAAGGCCCACCACCCTAACAGTGAAGCCAGAGCAGAGGAAACATCCCAGCTGGCCCCGGCTGGACCGCAGCAATAGTAAAGGCTACATGAAGCTGGAGAACAAGGAGGATCCTATGGACAGACTGCAGTTGCCCCAGGTAGCAGTCAAGCAGGATTACACCAAGAAAGAGAAACTGCTCATGATCTCCAGGTCTCACAATAACCTCAGCTTTGAACACGATAAGCAGTTCATGAACAACACTATGAAACGAGGGagctctgagaccaggttttAAATGGAACTCTTACAAAACCTGGTCTCAGACGTGTTTGTgccgtcttgccaactcctacggTCATTGCCACCTGATGAGGACCATATGAGTTGGCAAGAAAGCACAAACACATCTGGGTCCAGGCTATATGAAGCCCACTACTTGGACCTAAATCTaacaatgtgtttgtttgtgtgacaAGATCATTCTGCAATACAATTCTAGCTGTTCACTCTCAGTGTTGCTTAGTAAATTGTAAGTGTGATCACATGTTGTTTTGGGATGGAGCTCTCAGGTAGTCCGTCTGTTTGCAGTCTAAAGAAAGAGTGGCTGTGTTACGTGTGTGAGATATTTGCAGCACAAATCAATTCATAAACTTTTTTCAAATTAGGTTTAAAGTGAACTTAGAAGTACAGAAACCTACACCATTAACTTGTGGTTTGTTTTTCTTGTCACATTTCCAGTCTTTGTGTTGTTGCAACACGCTGTACTTTTTGTTCAAACCGGTCAGTGTACGTACAAGAGTTGTTTAGATATTTTGCTATGGAGCTTTTAATAATGTAATTGTTCTCAACACACACTGCTATTTTTTTAAGGAAAAAGGTGTAAAATTTACAATTTACTCAGAATAAAATTAAGCTTTTCAATGAGTAACATTTGTCTTTGATGATAGCCTATACTATTTTGTTCTCCCCAGCCTTGGAAATGTGCTATGTGTTCACAGAAAAGTATTTAACCTTGCCTTAGTAGATGTATTTTAAACACAAAGATAGAGTCAATACTATAAACAGTACAGAGTATTTCTGCTCGCATCTGTTTGTCTGATATTCATTTAGTCTCTTGAATTCTGAAAGTGAATGAACTGAGAAATTCTCCTAACATTGCTTTCTCGCCCCACAAACTTTGAATCGGTTGTGAAGGGAAAATATTTTATCTTTGGAAGCAAGGAAGTAAATAGCATTCCCATGTTGAACAATAGGAGATCTGGAAGTACCGAATTGGGAGCTGCCAGAGTAGAGAGGAGTCTCATAAGATGGTTCCATCTGGAGGGGGAGTGAACCAAGATGTGTGTGACTTCCAGGAAGCCTCATATTGAAACAAGGTTTGCACATTGTCAATACGAACAGGAGAAACTGTGCCGTGTGCATGTTCAGGATTTGATATATTTTCCATGTTTTCTTTTGCTGAAATGTCTATCTGACTGCAATTAGAAAGACATTTGATTGAATATTTTTGTGTCCCCTATTTGTTATCTGTAAGAGGTGGTATTTTGTGAAAACAGCAATCAATGAAACATTGGATGTCTGGGTGCAAGTCTATTTTGGACAGGTGGAGTGGCGTGAATTCCAATCCGCCTCTCATAGTCTTCAACAATACACCCTCTGCCTTGCCGATTTGGTCTGTTATTGCTATGCTCTTTTAAGCATGGGTAGACTATTCACAATATATCATCTTCCCATAAGCCACTTCTAAAATAATAAGGTAATATCATCCCATTGAGCACATactggttaaatcaacgttgtttccatgtaatttcaatgaaattatgtcgaaccaacgtggaatagacattgaattgtctgtgcccagtgggatatggatgaagCATTGGCTAATCCTCTGATGTTCTTAAGTAGTGAATGTTACTTCATGCAAAGTAATAAAGAGTATCTCTTGCtttgattttgtacatttgtatAGAATATCgtggcatatacagtgccttgcgaaagtattcggcccccttgaactttgcgtcattttgccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367732 lncRNA upstream 13332 15685234 ~ 15685472 (+) True G324701
TU367730 lncRNA upstream 14176 15684311 ~ 15684628 (+) True G324699
TU367728 lncRNA upstream 16130 15682469 ~ 15682674 (+) True G324697
TU367604 lncRNA upstream 80036 15616049 ~ 15618768 (+) True G324584
TU367690 lncRNA upstream 95784 15602706 ~ 15603020 (+) True G324664
TU367601 lncRNA downstream 1592 15712134 ~ 15713547 (+) True G324581
TU367751 lncRNA downstream 7863 15718405 ~ 15718657 (+) True G324719
TU367752 lncRNA downstream 8883 15719425 ~ 15719668 (+) True G324720
TU367699 lncRNA downstream 164786 15875328 ~ 15881137 (+) False LOC110522177
TU367700 lncRNA downstream 164786 15875328 ~ 15881137 (+) False LOC110522177
XM_036975736.1 mRNA upstream 18699 15645755 ~ 15680105 (+) True LOC110522174
XM_036975733.1 mRNA upstream 19492 15645755 ~ 15679312 (+) False LOC110522174
XM_036975734.1 mRNA upstream 19492 15645755 ~ 15679312 (+) False LOC110522174
XM_036975735.1 mRNA upstream 19492 15645755 ~ 15679312 (+) False LOC110522174
XM_021600334.2 mRNA upstream 85383 15590795 ~ 15613421 (+) False LOC110522173
XR_002473263.2 mRNA downstream 28552 15739094 ~ 15741483 (+) True LOC110522178
XM_036975765.1 mRNA downstream 122597 15833139 ~ 15881134 (+) False LOC110522177
XM_021600338.2 mRNA downstream 122598 15833140 ~ 15881134 (+) False LOC110522177
NM_001124616.1 mRNA downstream 233951 15944493 ~ 15949042 (+) True il20ra
XM_021600349.2 mRNA downstream 357955 16068497 ~ 16073105 (+) True hddc2
TU365525 other upstream 1813301 13850287 ~ 13885503 (+) True G322645
TU364241 other upstream 2555361 13142947 ~ 13143443 (+) True G321447
TU364003 other upstream 2717253 12980400 ~ 12981551 (+) True LOC110521046
TU364001 other upstream 2886439 12800836 ~ 12812365 (+) True LOC110522108
TU363816 other upstream 3149731 12548470 ~ 12549073 (+) True LOC110522117
TU368490 other downstream 724711 16435253 ~ 16436634 (+) False G325389
TU371014 other downstream 2553748 18264290 ~ 18304442 (+) True G327705
TU371315 other downstream 2716612 18427154 ~ 18428907 (+) True G327995
TU371828 other downstream 3046313 18756855 ~ 18757545 (+) True G328474
TU371796 other downstream 3084039 18794581 ~ 18806804 (+) True G328446

Expression Profile