RNA id: XM_036975434.1


Basic Information

Item Value
RNA id XM_036975434.1
length 2098
RNA type mRNA
GC content 0.47
exon number 7
gene id msra
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 20055721 ~ 20158845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCCCTTTGTCTGTTTGCTCAGCTTTGCGTTAAGGAAATCCAAAATACCCAGGGTGTAGGAGCTCTGCTTCaacgcaacccccccccccccctaaaaccaAACAAGAAAACAAGGCGAGAAAAATACTTAGAAAAATTAGAGGACGCCGAGGGCGAATGGGGCGCAAGCATAGTCACCAAAAAGCGATTTTCAACATCCAGCAACACTTCACAATGCTTCTTTTCGTGACTGGAGCAAGTTACTTGAGCCAAGAGATGGCCATGATCATTTGAACTCAATCTTTCTTTGTAATTTCAAGTTGAACGAAGCTGCCGCTTTTCTTTTCGGTCTATGTTTTTGAACACAAAAGGAATCTCAAAAGTGGACCTGGATTTTCTCCATCAAGGACTGCCAGAACTGTTGTGGCCCAAAAAGTTTTTTGCCTTTTCATTGATCGAACTTGAAGTCTCCATCAGAACATCACCCGGAGTAGATTTCGCCTTCAAAAGTTTTGTGATTGTAAAAATTTGCTGACCGCAATACGCCGCCAGTGTCCGAAGTTTGATAACATCAACTTAACTGCCTCTGTTGTCACTAAGTTGACCTCTTTGTGAGAGGGCTTTACAGCAACGCAACAGCGACTGGTTACTCAGGCCAAGTGCTCGTTGACCAAGCTTTAGTTTTCCATCGTGTCTCACAGTTGGACTATCTGAAGAAAATGTGAAGATATCTCGCTTTCAAAGGACTGAGATTTTCCAGCGTTTGGATTTGAGATCTGAGGCCAATGGATCTATAGTAGTTTATGTGAGGGTGGCACTGAACTAGTGCAGTTGCCTCAAGCTGCCTACTCTCAGTTGAAAATGGCTGAAGTTATGCAGGCCTGAGTGTTGTTTTGCTACTACATAATGTTTTTTCAAAATAATGAATTCTCAGCTTCACATTGGGAGTGTGGTACTGTGTAAGAGGACCCGGTGTGTCTACCATTCTACCGCTTTCCCACGATCAACGTCCTCGCAGCTGAATTTCACACTGACTACAGCCCCTTCAGAGAGAGTGGTCTCCCTGTCTCCGAATCCCCCCAGACCTGCGGCTTTTCTCATCTCCACCGTGTGGCTGATATTCCCTTCCTGTTATCTGTCATGGGCACAGCAGTGCCCTGTCCCCCCTGTCGTCCTTGCCAAGCACGATGTCAACGGCAACAGGACCGTACCACCATTCCCCGAGGGACTGCAGATGGCTATGTTTGGGATGGGCTGTTTCTGGGGCGCAGAGAGAAAGTTCTGGAAGCAGAAGGGAGTCTACTCCACCCAGGTGGGCTATGCTGGAGGCCTCACCCCCAACCCCACCTACGAAGAGACCTGCACAGGTAGGACAGGCCATACTGAGGTGGTGCGGGTGGTCTGGGAGCCAGAGAAGACCAGCTTCTCCAAACTGCTCAAGGTGTTCTGGGAGAGCCACAACCCAACTCAAGGAATGCGTCAGGGCAACGACGTAGGAGCGACCTATCGATCAGccatctacacatacacacaggagcAGCTTGAACAGGCTCTGGCCTCCAAAGATGACTATCAGAAGGTCCTGATAGAGGGGGGCTTTGGAGAAATCACCACAGAGATAGCCGAGAACCAGGAGTTCTACTATGCTGAGGACTACCACCAGCAGTACCTCAGCAAGAACCCCGGGGGATACTGTGGCCTGAGCGGCACCGGAGTCTCCTGTCCAATAGGACTCAAGAAATAACCACCTCTGTCCAATAGGGAATGACCACCAACCTCTGATTGTCTGATTCTGACTAGGAAATGTAAATACGCATTTCCGCTTGCTCATTGCAAaataagtctattttctattcaTTTAAATGGAAGTCACCTTAATTATGATGCAGTACTGAAGCATATTCAGGGTTTATATAAAAACAGTCTGTATCTGAGTCTTGTATTAATTGAAATAGTTTGGTAATCAAGCACCACATACATAAGACCTGTTTAAATGAATGCACATTCAGGTTTTAGTGTGCATTGTCTTGTTTGAATCAAATCAACTACAGTATGTACACCTGATTGAACTCTATGGTGCGTGCTGGTGGATTAAATGATGAAACGGTGTGTTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372991 lncRNA upstream 70675 19988394 ~ 19988932 (+) False G329493
TU372992 lncRNA upstream 70675 19988394 ~ 19988932 (+) True G329493
TU372971 lncRNA upstream 105689 19951181 ~ 19953918 (+) True G329473
TU372828 lncRNA upstream 292255 19752847 ~ 19767352 (+) True G329359
TU372753 lncRNA upstream 334152 19703279 ~ 19725455 (+) True G329287
TU373101 lncRNA downstream 44723 20203568 ~ 20203996 (+) True G329590
TU373112 lncRNA downstream 60170 20219015 ~ 20219491 (+) True G329601
TU373115 lncRNA downstream 62585 20221430 ~ 20221686 (+) True G329604
TU373116 lncRNA downstream 62997 20221842 ~ 20222049 (+) True G329605
TU373118 lncRNA downstream 65682 20224527 ~ 20224822 (+) True G329607
XM_036975844.1 mRNA upstream 15770 20015451 ~ 20043837 (+) True ift172
trnaa-ugc-6 mRNA upstream 44336 20015200 ~ 20015271 (+) True trnaa-ugc-6
NM_001124343.2 mRNA upstream 126613 19929307 ~ 19932994 (+) True ucn
XM_021600517.2 mRNA upstream 134337 19895886 ~ 19925270 (+) False LOC110522264
XM_021600533.2 mRNA downstream 144875 20303720 ~ 20309419 (+) True slc25a27
XM_021600537.2 mRNA downstream 168250 20327095 ~ 20328613 (+) False LOC110522276
LOC110522280 mRNA downstream 261359 20420204 ~ 20422517 (+) False LOC110522280
XR_005051485.1 mRNA downstream 269048 20427893 ~ 20431723 (+) False LOC118964445
XM_021600539.2 mRNA downstream 274929 20433774 ~ 20471815 (+) False LOC110522277
TU372530 other upstream 789082 19269416 ~ 19270525 (+) False LOC110522251
TU372517 other upstream 791051 19264038 ~ 19268556 (+) True LOC110522250
TU371898 other upstream 1130530 18923706 ~ 18929077 (+) True LOC110522244
TU371796 other upstream 1252803 18794581 ~ 18806804 (+) True G328446
TU371828 other upstream 1302062 18756855 ~ 18757545 (+) True G328474
TU373137 other downstream 93922 20252767 ~ 20253911 (+) True G329626
TU374473 other downstream 661823 20820668 ~ 20821157 (+) True G330771
TU375366 other downstream 1525089 21683934 ~ 21688608 (+) False LOC110522308
TU375361 other downstream 1530127 21688972 ~ 21701614 (+) True LOC110522308
TU376355 other downstream 2339655 22498500 ~ 22498996 (+) True G332458

Expression Profile